Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004746A_C02 KMC004746A_c02
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09841 hypothetical protein - upland cotton gi|606942|gb|AA... 175 5e-43
ref|NP_565313.1| fasciclin-like arabinogalactan-protein (FLA7); ... 172 4e-42
gb|AAM61109.1| unknown [Arabidopsis thaliana] 171 1e-41
pir||S52995 arabinogalactan-like protein - loblolly pine gi|6077... 86 5e-16
ref|NP_565475.1| fasciclin-like arabinogalactan-protein (FLA6); ... 83 3e-15
>pir||T09841 hypothetical protein - upland cotton gi|606942|gb|AAA79366.1|
unknown
Length = 263
Score = 175 bits (443), Expect = 5e-43
Identities = 90/151 (59%), Positives = 114/151 (74%), Gaps = 2/151 (1%)
Frame = -2
Query: 641 QLKQVILFHALPKYYSLADFKNLSQTGSTPTFAGGSYSLNFTDDSGTVHINSGWSKTKVT 462
Q K V+L+HALP+YY+LADF +LS+ G T AGG Y+L F D+SGTV ++SGWSKTKVT
Sbjct: 110 QFKSVLLYHALPRYYALADFNDLSEKGPISTLAGGQYTLQFNDESGTVRLDSGWSKTKVT 169
Query: 461 SAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSP-IEKSADSKASSP 285
SAVH++ PVA+Y++ KVLLPEA+FGTDIPPTPAPAPA I P+AD+P KS ++ +SS
Sbjct: 170 SAVHTSKPVAVYQIDKVLLPEAIFGTDIPPTPAPAPALGIGPSADTPSAAKSEETGSSSK 229
Query: 284 SSPDGSSSYKI-LSYGIWGNLAPLQLLVCWL 195
S GSSS +I ++ GIW L L L WL
Sbjct: 230 PSFSGSSSPRIMMNSGIWTQLV-LAFLGGWL 259
>ref|NP_565313.1| fasciclin-like arabinogalactan-protein (FLA7); protein id:
At2g04780.1, supported by cDNA: 11114., supported by
cDNA: gi_13377781, supported by cDNA: gi_20453157
[Arabidopsis thaliana] gi|25350182|pir||D84461
hypothetical protein At2g04780 [imported] - Arabidopsis
thaliana gi|4544419|gb|AAD22328.1| expressed protein
[Arabidopsis thaliana]
gi|13377782|gb|AAK20860.1|AF333973_1 fasciclin-like
arabinogalactan-protein 7 [Arabidopsis thaliana]
gi|20453158|gb|AAM19820.1| At2g04780/F28I8.18
[Arabidopsis thaliana] gi|24417404|gb|AAN60312.1|
unknown [Arabidopsis thaliana]
gi|24797004|gb|AAN64514.1| At2g04780/F28I8.18
[Arabidopsis thaliana]
Length = 254
Score = 172 bits (435), Expect = 4e-42
Identities = 89/150 (59%), Positives = 114/150 (75%), Gaps = 1/150 (0%)
Frame = -2
Query: 641 QLKQVILFHALPKYYSLADFKNLSQTGSTPTFAGGSYSLNFTDDSGTVHINSGWSKTKVT 462
QLKQ++LFHALP YYSL++FKNLSQ+G TFAGG YSL FTD SGTV I+S W++TKV+
Sbjct: 109 QLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVS 168
Query: 461 SAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSPIEKSADSK-ASSP 285
S+V STDPVA+Y+V +VLLPEA+FGTD+PP PAPAPAP ++ +DSP ADS+ ASSP
Sbjct: 169 SSVFSTDPVAVYQVNRVLLPEAIFGTDVPPMPAPAPAPIVSAPSDSP--SVADSEGASSP 226
Query: 284 SSPDGSSSYKILSYGIWGNLAPLQLLVCWL 195
S +S K+L LAP+ +++ L
Sbjct: 227 KSSHKNSGQKLL-------LAPISMVISGL 249
>gb|AAM61109.1| unknown [Arabidopsis thaliana]
Length = 251
Score = 171 bits (432), Expect = 1e-41
Identities = 88/150 (58%), Positives = 114/150 (75%), Gaps = 1/150 (0%)
Frame = -2
Query: 641 QLKQVILFHALPKYYSLADFKNLSQTGSTPTFAGGSYSLNFTDDSGTVHINSGWSKTKVT 462
QLKQ++LFHALP YYSL++FKNLSQ+G TFAGG YSL FTD SGTV I+S W++TKV+
Sbjct: 106 QLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVS 165
Query: 461 SAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSPIEKSADSK-ASSP 285
S+V STDPVA+Y++ +VLLPEA+FGTD+PP PAPAPAP ++ +DSP ADS+ ASSP
Sbjct: 166 SSVFSTDPVAVYQLNRVLLPEAIFGTDVPPMPAPAPAPIVSAPSDSP--SVADSEGASSP 223
Query: 284 SSPDGSSSYKILSYGIWGNLAPLQLLVCWL 195
S +S K+L LAP+ +++ L
Sbjct: 224 KSSHKNSGQKLL-------LAPISMVISGL 246
>pir||S52995 arabinogalactan-like protein - loblolly pine
gi|607774|gb|AAA74420.1| arabinogalactan-like protein
Length = 264
Score = 85.5 bits (210), Expect = 5e-16
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Frame = -2
Query: 629 VILFHALPKYYSLADFKNLSQTGSTPTFA-GGSYSLNFTDDSGTVHINSGWSKTKVTSAV 453
++ +HALP YY+ + F+ +S T GG + +N T +V++++G T V SAV
Sbjct: 120 LLQYHALPSYYTFSQFQTVSNPVRTMASGNGGPFGVNVTAFGNSVNVSTGLVNTPVNSAV 179
Query: 452 HSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSPIEKSADSKASSPSSPD 273
+S PVA+Y+V KVLLPE +FG PA AP PE SP + + S S+
Sbjct: 180 YSQSPVAVYQVDKVLLPEEIFGV---KPPAAAPTPEPGAPVSSPAVSPSGASGSGASTSS 236
Query: 272 GSSSYKILSYGIW 234
S L+ G++
Sbjct: 237 ACGSMAALAKGLY 249
>ref|NP_565475.1| fasciclin-like arabinogalactan-protein (FLA6); protein id:
At2g20520.1, supported by cDNA: gi_13377779 [Arabidopsis
thaliana] gi|13377780|gb|AAK20859.1|AF333972_1
fasciclin-like arabinogalactan-protein 6 [Arabidopsis
thaliana] gi|20198085|gb|AAD25652.2| putative surface
protein [Arabidopsis thaliana]
Length = 247
Score = 83.2 bits (204), Expect = 3e-15
Identities = 52/136 (38%), Positives = 71/136 (51%), Gaps = 4/136 (2%)
Frame = -2
Query: 632 QVILFHALPKYYSLADFKNLSQTGSTPTFA--GGSYSLNFTDD--SGTVHINSGWSKTKV 465
Q++L+H +PKYYSL+D S T GG + LNFT S V++++G +T++
Sbjct: 104 QLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRI 163
Query: 464 TSAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSPIEKSADSKASSP 285
+A+ P+A+Y V VLLPE +FGT PT APAP S ADS A+
Sbjct: 164 NNALRQQFPLAVYVVDSVLLPEELFGTKTTPTGAPAP-------KSSTSSSDADSPAADD 216
Query: 284 SSPDGSSSYKILSYGI 237
SS K S GI
Sbjct: 217 EHKSAGSSVKRTSLGI 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,251,193
Number of Sequences: 1393205
Number of extensions: 12859595
Number of successful extensions: 101874
Number of sequences better than 10.0: 542
Number of HSP's better than 10.0 without gapping: 60646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90096
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
