Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004742A_C02 KMC004742A_c02
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703321.1| ABC transporter, putative [Plasmodium falciparu... 33 1.4
>ref|NP_703321.1| ABC transporter, putative [Plasmodium falciparum 3D7]
gi|6594246|emb|CAB63558.1| ABC transporter, putative
[Plasmodium falciparum 3D7]
Length = 1822
Score = 33.5 bits (75), Expect = 1.4
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = +1
Query: 145 ILQKFSFHYLEFSTQKIVPCLQVAAT*LSLSRISFSNIQRPNSMHSNLIGR*ANEPLGGP 324
ILQK YLE+ I+P + + + + S I + NI +H+N++ N PL
Sbjct: 1206 ILQK-QVRYLEYFV--ILPIISLVTSGICFSMIIYGNITSAIKVHNNILYSILNAPL--- 1259
Query: 325 KSSLLLSSNDYCFGGVISLL*IHIFSLSN---STIY--FFIIKQCTLNSLEHIENSCKCS 489
+ ++N G +I+ I I + IY FFI +C L+SL I C
Sbjct: 1260 --YIFYNNN---LGNIINRFIIDISAFDYGFLKRIYKAFFIFFRCILSSLLIIYMIRDCI 1314
Query: 490 IIFIF 504
IF F
Sbjct: 1315 FIFPF 1319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,101,386
Number of Sequences: 1393205
Number of extensions: 7738188
Number of successful extensions: 12570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12564
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
