Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004738A_C01 KMC004738A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF80469.1|AF163150_1 acetyl-CoA carboxylase [Glycine max] 143 1e-33
pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 143 1e-33
pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 143 1e-33
pir||T09855 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 127 1e-28
gb|AAK60339.1| biotin carboxylase [Brassica napus] 121 7e-27
>gb|AAF80469.1|AF163150_1 acetyl-CoA carboxylase [Glycine max]
Length = 539
Score = 143 bits (361), Expect = 1e-33
Identities = 72/82 (87%), Positives = 76/82 (91%)
Frame = -2
Query: 580 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEEL 401
LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDF+NGKVDTAFIPKHEEEL
Sbjct: 459 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFRNGKVDTAFIPKHEEEL 518
Query: 400 AVPPPQKRVLSNTTKELNGATA 335
A+ PPQK VL+N EL G+TA
Sbjct: 519 AM-PPQKMVLANRVNELAGSTA 539
>pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain
precursor - soybean gi|3219361|gb|AAC23573.1| biotin
carboxylase precursor [Glycine max]
Length = 539
Score = 143 bits (361), Expect = 1e-33
Identities = 72/82 (87%), Positives = 76/82 (91%)
Frame = -2
Query: 580 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEEL 401
LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDF+NGKVDTAFIPKHEEEL
Sbjct: 459 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFRNGKVDTAFIPKHEEEL 518
Query: 400 AVPPPQKRVLSNTTKELNGATA 335
A+ PPQK VL+N EL G+TA
Sbjct: 519 AM-PPQKMVLANRVNELAGSTA 539
>pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain
precursor - soybean gi|2253384|gb|AAC02267.1| biotin
carboxylase precursor [Glycine max]
gi|8886467|gb|AAF80468.1|AF163149_1 acetyl-CoA
carboxylase [Glycine max]
Length = 539
Score = 143 bits (361), Expect = 1e-33
Identities = 72/82 (87%), Positives = 76/82 (91%)
Frame = -2
Query: 580 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEEL 401
LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDF+NGKVDTAFIPKHEEEL
Sbjct: 459 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFRNGKVDTAFIPKHEEEL 518
Query: 400 AVPPPQKRVLSNTTKELNGATA 335
A+ PPQK VL+N EL G+TA
Sbjct: 519 AM-PPQKMVLANRVNELAGSTA 539
>pir||T09855 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain -
castor bean (fragment) gi|870711|gb|AAC41658.1| biotin
carboxylase gi|1582355|prf||2118337B Ac-CoA
carboxylase:SUBUNIT=biotin carboxylase
Length = 124
Score = 127 bits (318), Expect = 1e-28
Identities = 68/82 (82%), Positives = 70/82 (84%)
Frame = -2
Query: 580 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEEL 401
LIVWAPTREKAIERMKRALDDTIITGVPTTI+YHKLILDIEDFKNGKVDTAFIPKHE+EL
Sbjct: 48 LIVWAPTREKAIERMKRALDDTIITGVPTTIEYHKLILDIEDFKNGKVDTAFIPKHEQEL 107
Query: 400 AVPPPQKRVLSNTTKELNGATA 335
PQK V KEL ATA
Sbjct: 108 QA--PQKIV---PVKELASATA 124
>gb|AAK60339.1| biotin carboxylase [Brassica napus]
Length = 535
Score = 121 bits (303), Expect = 7e-27
Identities = 57/63 (90%), Positives = 62/63 (97%)
Frame = -2
Query: 580 LIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEEL 401
LIVWAPTRE+AIERMKRAL+DTIITGVPTTI+YHKLIL++EDFKNGKVDTAFIPKHEEEL
Sbjct: 459 LIVWAPTRERAIERMKRALNDTIITGVPTTIEYHKLILEVEDFKNGKVDTAFIPKHEEEL 518
Query: 400 AVP 392
A P
Sbjct: 519 AEP 521
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,152,021
Number of Sequences: 1393205
Number of extensions: 9336132
Number of successful extensions: 23873
Number of sequences better than 10.0: 283
Number of HSP's better than 10.0 without gapping: 22841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23838
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
