Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004737A_C01 KMC004737A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194841.1| kinase binding protein - like; protein id: At4g... 159 2e-38
gb|AAF04503.1|AF167573_1 protein methyltransferase [Mus musculus] 121 3e-27
ref|XP_283233.1| SKB1 homolog [Mus musculus] 121 3e-27
ref|NP_038796.1| SKB1 homolog; Jak-binding protein 1 [Mus muscul... 121 3e-27
ref|XP_214195.1| similar to SKB1 homolog; SKB1 (S. cerevisiae) h... 121 3e-27
>ref|NP_194841.1| kinase binding protein - like; protein id: At4g31120.1 [Arabidopsis
thaliana] gi|7486496|pir||T10666 hypothetical protein
F6E21.40 - Arabidopsis thaliana
gi|7270014|emb|CAB79830.1| kinase binding protein-like
[Arabidopsis thaliana]
Length = 670
Score = 159 bits (401), Expect = 2e-38
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = -1
Query: 466 AGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPICVNPGSTLEVQFWRCCGSTKV 287
AGYFD+ LYKDVHLGIEP+TATPNMFSWF IFFPLR P+ V+P + LEV FWRCCGS+KV
Sbjct: 585 AGYFDSVLYKDVHLGIEPTTATPNMFSWFPIFFPLRKPVEVHPDTPLEVHFWRCCGSSKV 644
Query: 286 WYEWCVTSPSCSPIHNTNGRSYWVGL 209
WYEW V+SP+ SP+HNTNGRSYWVGL
Sbjct: 645 WYEWSVSSPTPSPMHNTNGRSYWVGL 670
>gb|AAF04503.1|AF167573_1 protein methyltransferase [Mus musculus]
Length = 631
Score = 121 bits (304), Expect = 3e-27
Identities = 51/86 (59%), Positives = 62/86 (71%)
Frame = -1
Query: 466 AGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPICVNPGSTLEVQFWRCCGSTKV 287
AGYF+ LY+D+ L I P T +P MFSWF IFFP++ PI V+ G + V+FWRC S KV
Sbjct: 546 AGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSKKV 605
Query: 286 WYEWCVTSPSCSPIHNTNGRSYWVGL 209
WYEW VT+P CS IHN GRSY +GL
Sbjct: 606 WYEWAVTAPVCSSIHNPTGRSYTIGL 631
>ref|XP_283233.1| SKB1 homolog [Mus musculus]
Length = 637
Score = 121 bits (304), Expect = 3e-27
Identities = 51/86 (59%), Positives = 62/86 (71%)
Frame = -1
Query: 466 AGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPICVNPGSTLEVQFWRCCGSTKV 287
AGYF+ LY+D+ L I P T +P MFSWF IFFP++ PI V+ G + V+FWRC S KV
Sbjct: 552 AGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSKKV 611
Query: 286 WYEWCVTSPSCSPIHNTNGRSYWVGL 209
WYEW VT+P CS IHN GRSY +GL
Sbjct: 612 WYEWAVTAPVCSSIHNPTGRSYTIGL 637
>ref|NP_038796.1| SKB1 homolog; Jak-binding protein 1 [Mus musculus]
gi|23271482|gb|AAH23905.1| Similar to SKB1 homolog (S.
pombe) [Mus musculus]
Length = 637
Score = 121 bits (304), Expect = 3e-27
Identities = 51/86 (59%), Positives = 62/86 (71%)
Frame = -1
Query: 466 AGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPICVNPGSTLEVQFWRCCGSTKV 287
AGYF+ LY+D+ L I P T +P MFSWF IFFP++ PI V+ G + V+FWRC S KV
Sbjct: 552 AGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSKKV 611
Query: 286 WYEWCVTSPSCSPIHNTNGRSYWVGL 209
WYEW VT+P CS IHN GRSY +GL
Sbjct: 612 WYEWAVTAPVCSSIHNPTGRSYTIGL 637
>ref|XP_214195.1| similar to SKB1 homolog; SKB1 (S. cerevisiae) homolog; skb1 (S.
pombe) homolog [Homo sapiens] [Rattus norvegicus]
Length = 109
Score = 121 bits (304), Expect = 3e-27
Identities = 51/86 (59%), Positives = 62/86 (71%)
Frame = -1
Query: 466 AGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPICVNPGSTLEVQFWRCCGSTKV 287
AGYF+ LY+D+ L I P T +P MFSWF IFFP++ PI V+ G + V+FWRC S KV
Sbjct: 24 AGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSKKV 83
Query: 286 WYEWCVTSPSCSPIHNTNGRSYWVGL 209
WYEW VT+P CS IHN GRSY +GL
Sbjct: 84 WYEWAVTAPVCSSIHNPTGRSYTIGL 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,159,132
Number of Sequences: 1393205
Number of extensions: 8874848
Number of successful extensions: 18077
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 17604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18063
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
