Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004733A_C01 KMC004733A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16035.1| hypothetical protein~predicted by FGENESH etc. [... 87 2e-16
ref|NP_182266.1| unknown protein; protein id: At2g47440.1, suppo... 75 9e-13
ref|NP_191816.1| putative protein; protein id: At3g62570.1, supp... 74 1e-12
gb|AAO42881.1| At4g02100 [Arabidopsis thaliana] 70 2e-11
ref|NP_192119.1| hypothetical protein; protein id: At4g02100.1 [... 70 2e-11
>dbj|BAC16035.1| hypothetical protein~predicted by FGENESH etc. [Oryza sativa
(japonica cultivar-group)]
Length = 648
Score = 86.7 bits (213), Expect = 2e-16
Identities = 52/126 (41%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Frame = -3
Query: 607 QKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNK--PDSRSCNVV 434
QKGY+ +M + DEEAAE+QR K A A AAA A + E E P+ + V
Sbjct: 523 QKGYSFIMSVVQDEEAAERQRAKDAAAATAAAAAAAAAAALAREQEETAAVPEKARISSV 582
Query: 433 EDKST----------------LVSSSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVK 302
ST + +++ + VFQGVFCRD+AVVG LLS+ F++PIPVK
Sbjct: 583 SVPSTNVQVQVTQAAAMPTAAMAAAAAMGSPVFQGVFCRDMAVVGTLLSRGGFDRPIPVK 642
Query: 301 YEALSC 284
EA+SC
Sbjct: 643 CEAMSC 648
>ref|NP_182266.1| unknown protein; protein id: At2g47440.1, supported by cDNA:
gi_20466218 [Arabidopsis thaliana]
gi|7487570|pir||T00440 hypothetical protein At2g47440
[imported] - Arabidopsis thaliana
gi|2529683|gb|AAC62866.1| unknown protein [Arabidopsis
thaliana] gi|20466219|gb|AAM20427.1| unknown protein
[Arabidopsis thaliana] gi|25084073|gb|AAN72168.1|
unknown protein [Arabidopsis thaliana]
Length = 526
Score = 74.7 bits (182), Expect = 9e-13
Identities = 47/108 (43%), Positives = 60/108 (55%)
Frame = -3
Query: 607 QKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNKPDSRSCNVVED 428
QKGYT+V I AE+QRK A A + E KP +S ++
Sbjct: 440 QKGYTAVTAII-----AEEQRKNAIAHA--------------QKIEERKPVEKSGSI--K 478
Query: 427 KSTLVSSSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVKYEALSC 284
++ + VN +QGVFCRDLA VGNLL++A FN PIPVKYEAL+C
Sbjct: 479 RTGNAETKPVNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 526
>ref|NP_191816.1| putative protein; protein id: At3g62570.1, supported by cDNA:
gi_16930402 [Arabidopsis thaliana]
gi|16930403|gb|AAL31887.1|AF419555_1
AT3g62570/T12C14_270 [Arabidopsis thaliana]
gi|25141219|gb|AAN73304.1| At3g62570/T12C14_270
[Arabidopsis thaliana]
Length = 552
Score = 74.3 bits (181), Expect = 1e-12
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = -3
Query: 607 QKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNKPDSRSCNVVED 428
Q+GYT++ I +EE QRKK + Q+ K V HEP + E
Sbjct: 461 QRGYTALAAAIAEEE----QRKKMMV-----LTQMSTKTVEEHEPVEKSGSITLTDFAEI 511
Query: 427 KSTLVSSSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVKYEALSC 284
K N +QGVFCRDLA VG+LLS+ FNQPIP+KY+A+SC
Sbjct: 512 KPG-------NSNAYQGVFCRDLAAVGSLLSRTGFNQPIPMKYDAISC 552
>gb|AAO42881.1| At4g02100 [Arabidopsis thaliana]
Length = 546
Score = 70.5 bits (171), Expect = 2e-11
Identities = 48/111 (43%), Positives = 60/111 (53%), Gaps = 3/111 (2%)
Frame = -3
Query: 607 QKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNKPDSRSCNVVED 428
QKGY+ V I A EKQRK A+ AA A +S N++E
Sbjct: 459 QKGYSVVTSNIA---AVEKQRK--AIAAAVAT------------------ESHRSNIIET 495
Query: 427 KSTLVS---SSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVKYEALSC 284
V+ +S N V +GVFCRDL VVG+L+++ FNQPIPVKYEALSC
Sbjct: 496 PIRAVAVAVNSNNNTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 546
>ref|NP_192119.1| hypothetical protein; protein id: At4g02100.1 [Arabidopsis
thaliana] gi|7486838|pir||T01511 hypothetical protein
T10M13.11 - Arabidopsis thaliana
gi|2104534|gb|AAC78702.1| hypothetical protein
[Arabidopsis thaliana] gi|7268594|emb|CAB80703.1|
hypothetical protein [Arabidopsis thaliana]
Length = 571
Score = 70.5 bits (171), Expect = 2e-11
Identities = 48/111 (43%), Positives = 60/111 (53%), Gaps = 3/111 (2%)
Frame = -3
Query: 607 QKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNKPDSRSCNVVED 428
QKGY+ V I A EKQRK A+ AA A +S N++E
Sbjct: 484 QKGYSVVTSNIA---AVEKQRK--AIAAAVAT------------------ESHRSNIIET 520
Query: 427 KSTLVS---SSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVKYEALSC 284
V+ +S N V +GVFCRDL VVG+L+++ FNQPIPVKYEALSC
Sbjct: 521 PIRAVAVAVNSNNNTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 571
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,965,112
Number of Sequences: 1393205
Number of extensions: 11161130
Number of successful extensions: 31444
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31363
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
