Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004732A_C01 KMC004732A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196265.1| putative protein; protein id: At5g06470.1 [Arab... 121 6e-27
emb|CAD40593.1| oj000126_13.15 [Oryza sativa (japonica cultivar-... 105 4e-22
dbj|BAC15940.1| OJ1714_H10.16 [Oryza sativa (japonica cultivar-g... 102 2e-21
ref|NP_192801.1| putative protein; protein id: At4g10630.1 [Arab... 99 3e-20
ref|NP_196007.1| putative protein; protein id: At5g03870.1 [Arab... 99 4e-20
>ref|NP_196265.1| putative protein; protein id: At5g06470.1 [Arabidopsis thaliana]
gi|9758427|dbj|BAB08969.1|
emb|CAB81925.1~gene_id:MHF15.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 239
Score = 121 bits (303), Expect = 6e-27
Identities = 54/106 (50%), Positives = 75/106 (69%), Gaps = 6/106 (5%)
Frame = -3
Query: 546 DELWSILDGKTLPPRLFVKGRYIGGAEEVVTLHEQGKLKKLFEGVPMDYFDGACDACGGV 367
+E+W +L GK PRLF++GRYIGGAEEVV L+E GKLKKL +G+ D C++C
Sbjct: 135 EEMWRLLGGKVTSPRLFIRGRYIGGAEEVVALNENGKLKKLLQGI--SQVDSPCESCENE 192
Query: 366 RFVLCFKCNGSHKVIAENEEKES------TQCPQCNENGLIVCPYC 247
RF++C CNGS +++AE+ ++ES T+C +CNENGL+ CP C
Sbjct: 193 RFLICSSCNGSTRLLAEHHDEESSNDNMWTRCRECNENGLVKCPLC 238
>emb|CAD40593.1| oj000126_13.15 [Oryza sativa (japonica cultivar-group)]
gi|21741722|emb|CAD40645.1| OSJNBa0073L04.2 [Oryza
sativa (japonica cultivar-group)]
Length = 448
Score = 105 bits (262), Expect = 4e-22
Identities = 51/101 (50%), Positives = 67/101 (65%), Gaps = 1/101 (0%)
Frame = -3
Query: 546 DELWSILDGKTLP-PRLFVKGRYIGGAEEVVTLHEQGKLKKLFEGVPMDYFDGACDACGG 370
+EL +L G+ + P +FV+GR++GGA EV L E+GKLK L +G+P C C G
Sbjct: 349 EELRLLLGGREVRVPAVFVRGRHVGGAAEVTKLEEEGKLKALLQGLPRARV--WCAGCAG 406
Query: 369 VRFVLCFKCNGSHKVIAENEEKESTQCPQCNENGLIVCPYC 247
VRFV+C CNGS KV + E KE+ QC +CNENGL+ CP C
Sbjct: 407 VRFVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
>dbj|BAC15940.1| OJ1714_H10.16 [Oryza sativa (japonica cultivar-group)]
Length = 256
Score = 102 bits (255), Expect = 2e-21
Identities = 50/105 (47%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Frame = -3
Query: 546 DELWSILDGKTLPPRLFVKGRYIGGAEEVVTLHEQGKLKKLFEGVPMDYFDGA-----CD 382
DELWS+ K +PPRLFV+GR +GGA +V+ LHE G+L L A CD
Sbjct: 152 DELWSVTGEKAVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSAAAAAAKCD 211
Query: 381 ACGGVRFVLCFKCNGSHKVIAENEEKESTQCPQCNENGLIVCPYC 247
ACGG+RFV+C +C+GS KV + E +C CNENGL++C C
Sbjct: 212 ACGGLRFVVCGECDGSRKVF-DGERGRGVRCRGCNENGLVMCALC 255
>ref|NP_192801.1| putative protein; protein id: At4g10630.1 [Arabidopsis thaliana]
gi|7487644|pir||T04198 hypothetical protein T4F9.90 -
Arabidopsis thaliana gi|4115916|gb|AAD03427.1| F3H7.9
gene product [Arabidopsis thaliana]
gi|4539441|emb|CAB40029.1| putative protein [Arabidopsis
thaliana] gi|7267760|emb|CAB78186.1| putative protein
[Arabidopsis thaliana]
Length = 334
Score = 99.4 bits (246), Expect = 3e-20
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Frame = -3
Query: 513 LPPRLFVKGRYIGGAEEVVTLHEQGKLKKLFEGVPMDYF----DGACDACGGVRFVLCFK 346
LPPR+FVKGRYIGG EEV+ L E+G +L G+P GACD CGG+ F+ CF+
Sbjct: 240 LPPRVFVKGRYIGGGEEVLRLVEEGSFGELISGIPRKKAGGCESGACDGCGGLFFLPCFR 299
Query: 345 CNGSHKVI-AENEEKESTQCPQCNENGLIVCPYC 247
CNGS K++ +C +CNENGL+ CP C
Sbjct: 300 CNGSCKMVKGWGSASVVVRCNECNENGLVPCPIC 333
>ref|NP_196007.1| putative protein; protein id: At5g03870.1 [Arabidopsis thaliana]
gi|11280867|pir||T48414 hypothetical protein F8F6.80 -
Arabidopsis thaliana gi|7406397|emb|CAB85507.1| putative
protein [Arabidopsis thaliana]
gi|9758016|dbj|BAB08613.1|
emb|CAB85507.1~gene_id:MED24.17~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 384
Score = 98.6 bits (244), Expect = 4e-20
Identities = 46/88 (52%), Positives = 60/88 (67%), Gaps = 1/88 (1%)
Frame = -3
Query: 507 PRLFVKGRYIGGAEEVVTLHEQGKLKKLFEGVPMDYFDGA-CDACGGVRFVLCFKCNGSH 331
P +FVKGR +G EEV+ L E+GKL L EG+P G+ C CGG+RF++C CNGS
Sbjct: 297 PAVFVKGRMVGSVEEVMRLEEEGKLGILLEGIPAARLGGSCCRGCGGMRFMMCVVCNGSC 356
Query: 330 KVIAENEEKESTQCPQCNENGLIVCPYC 247
KV E E+K +C +CNENGL++CP C
Sbjct: 357 KV-REEEKKSMVKCLKCNENGLVLCPIC 383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,373,968
Number of Sequences: 1393205
Number of extensions: 10474517
Number of successful extensions: 37645
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 31964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36053
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
