Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004731A_C01 KMC004731A_c01
(1002 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173506.1| similar to putative RING zinc finger protein; p... 198 1e-49
ref|NP_177767.1| putative RING zinc finger protein; protein id: ... 194 2e-48
gb|AAM63811.1| putative RING zinc finger protein [Arabidopsis th... 194 2e-48
ref|NP_179337.1| putative RING zinc finger protein; protein id: ... 169 5e-41
ref|NP_195273.1| RING-H2 finger protein RHA3b; protein id: At4g3... 166 4e-40
>ref|NP_173506.1| similar to putative RING zinc finger protein; protein id:
At1g20823.1 [Arabidopsis thaliana]
gi|25402932|pir||F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana
gi|8886938|gb|AAF80624.1|AC069251_17 F2D10.34
[Arabidopsis thaliana] gi|15027985|gb|AAK76523.1|
unknown protein [Arabidopsis thaliana]
Length = 197
Score = 198 bits (503), Expect = 1e-49
Identities = 107/171 (62%), Positives = 120/171 (69%), Gaps = 9/171 (5%)
Frame = -2
Query: 818 LESDFVVILAALLCALICVVGLIAVARCAWLRRVTGDG----GYPTRQ-----ALANKGV 666
L SD VVILAALLCALICV+GLIAV+RC WLRR+ G T+ A ANKG+
Sbjct: 26 LNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAANKGL 85
Query: 665 KKKVVQSLPKFAYADSSPREWLATTECAICLAEFDAGDEIRVLPQCGHGFHVGCIDTWLG 486
KKKV+QSLPK ++ SP E ECAICLAEF AGDE+RVLPQCGHGFHV CIDTWLG
Sbjct: 86 KKKVLQSLPKLTFSPESP-ESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLG 144
Query: 485 SHSSCPSCRQVLAVAARCQRCGRLPAANNSSGGGATSVAVNEPELKSGEDE 333
SHSSCPSCRQ+L V ARC +CG LP SS G S E +K GED+
Sbjct: 145 SHSSCPSCRQIL-VVARCHKCGGLP---GSSSSGLESEPEIEIRIKQGEDD 191
>ref|NP_177767.1| putative RING zinc finger protein; protein id: At1g76410.1,
supported by cDNA: 27464. [Arabidopsis thaliana]
gi|25406446|pir||G96791 probable RING zinc finger
protein, 5217-5774 [imported] - Arabidopsis thaliana
gi|6554478|gb|AAF16660.1|AC012394_9 putative RING zinc
finger protein; 36546-35989 [Arabidopsis thaliana]
gi|12323975|gb|AAG51946.1|AC015450_7 putative RING zinc
finger protein; 5217-5774 [Arabidopsis thaliana]
gi|26452794|dbj|BAC43477.1| putative RING finger protein
[Arabidopsis thaliana] gi|28973309|gb|AAO63979.1|
putative RING zinc finger protein [Arabidopsis thaliana]
Length = 185
Score = 194 bits (493), Expect = 2e-48
Identities = 101/182 (55%), Positives = 124/182 (67%), Gaps = 5/182 (2%)
Frame = -2
Query: 854 AAAVAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWLRRVTG----DGGYPTRQ 687
A + +P + SD V+ILA LLCAL C++GLIAV+RCAWLRR+ D +P
Sbjct: 12 ANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPV 71
Query: 686 ALANKGVKKKVVQSLPKFAYA-DSSPREWLATTECAICLAEFDAGDEIRVLPQCGHGFHV 510
A ANKG+KKKV++SLPK Y+ DS P E L ECAICL EF AGDE+RVLPQCGHGFHV
Sbjct: 72 AAANKGLKKKVLRSLPKLTYSPDSPPAEKLV--ECAICLTEFAAGDELRVLPQCGHGFHV 129
Query: 509 GCIDTWLGSHSSCPSCRQVLAVAARCQRCGRLPAANNSSGGGATSVAVNEPELKSGEDEN 330
CIDTWLGSHSSCPSCRQ+L V RC +CG LP +++S EP+ + + E+
Sbjct: 130 SCIDTWLGSHSSCPSCRQIL-VVTRCHKCGGLPGSSSSG---------PEPDTRIKQRED 179
Query: 329 AP 324
P
Sbjct: 180 GP 181
>gb|AAM63811.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 186
Score = 194 bits (493), Expect = 2e-48
Identities = 101/182 (55%), Positives = 124/182 (67%), Gaps = 5/182 (2%)
Frame = -2
Query: 854 AAAVAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWLRRVTG----DGGYPTRQ 687
A + +P + SD V+ILA LLCAL C++GLIAV+RCAWLRR+ D +P
Sbjct: 12 ANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPV 71
Query: 686 ALANKGVKKKVVQSLPKFAYA-DSSPREWLATTECAICLAEFDAGDEIRVLPQCGHGFHV 510
A ANKG+KKKV++SLPK Y+ DS P E L ECAICL EF AGDE+RVLPQCGHGFHV
Sbjct: 72 AAANKGLKKKVLRSLPKLTYSPDSPPAEKLV--ECAICLTEFAAGDELRVLPQCGHGFHV 129
Query: 509 GCIDTWLGSHSSCPSCRQVLAVAARCQRCGRLPAANNSSGGGATSVAVNEPELKSGEDEN 330
CIDTWLGSHSSCPSCRQ+L V RC +CG LP +++S EP+ + + E+
Sbjct: 130 SCIDTWLGSHSSCPSCRQIL-VVTRCHKCGGLPGSSSSG---------PEPDTRIKQRED 179
Query: 329 AP 324
P
Sbjct: 180 GP 181
>ref|NP_179337.1| putative RING zinc finger protein; protein id: At2g17450.1,
supported by cDNA: gi_13877952, supported by cDNA:
gi_17065625, supported by cDNA: gi_3790572 [Arabidopsis
thaliana] gi|11358780|pir||T51844 RING-H2 finger protein
RHA3a [imported] - Arabidopsis thaliana
gi|3790573|gb|AAC68673.1| RING-H2 finger protein RHA3a
[Arabidopsis thaliana] gi|4914367|gb|AAD32903.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|13877953|gb|AAK44054.1|AF370239_1 putative RING zinc
finger protein [Arabidopsis thaliana]
gi|17065626|gb|AAL33807.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 185
Score = 169 bits (429), Expect = 5e-41
Identities = 94/176 (53%), Positives = 108/176 (60%), Gaps = 9/176 (5%)
Frame = -2
Query: 905 MTRAMRILNTAGKSAAVAAAVAPPP----EAVTLESDFVVILAALLCALICVVGLIAVAR 738
MTR R+L TA APPP E + ESD VVIL+ALLCALICV GL AV R
Sbjct: 1 MTRPSRLLETA----------APPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVR 50
Query: 737 CAWLRRVTGDGGYPTRQALANKGVKKKVVQSLPKFAYADSSPREWLA-----TTECAICL 573
CAWLRR T G P+ NKG+KKK +QSLP+ + + A +TECAICL
Sbjct: 51 CAWLRRFTAGGDSPS----PNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICL 106
Query: 572 AEFDAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVAARCQRCGRLPAA 405
+F G+EIRVLP CGH FHV CID WL S SSCPSCR++L RC RCG A
Sbjct: 107 TDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRIL-TPVRCDRCGHASTA 161
>ref|NP_195273.1| RING-H2 finger protein RHA3b; protein id: At4g35480.1, supported by
cDNA: 31493., supported by cDNA: gi_3790574 [Arabidopsis
thaliana] gi|7488312|pir||T41745 RING-H2 finger protein
RHA3b [imported] - Arabidopsis thaliana
gi|3790575|gb|AAC68674.1| RING-H2 finger protein RHA3b
[Arabidopsis thaliana] gi|5830790|emb|CAB54876.1|
RING-H2 finger protein RHA3b [Arabidopsis thaliana]
gi|7270499|emb|CAB80264.1| RING-H2 finger protein RHA3b
[Arabidopsis thaliana] gi|21592694|gb|AAM64643.1|
RING-H2 finger protein RHA3b [Arabidopsis thaliana]
Length = 200
Score = 166 bits (421), Expect = 4e-40
Identities = 90/176 (51%), Positives = 108/176 (61%), Gaps = 14/176 (7%)
Frame = -2
Query: 905 MTRAMRILNTAGKSAAVAAAVAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWL 726
MTR+ R L TA PP E + E+D VVIL+ALLCAL+CV GL AVARCAWL
Sbjct: 1 MTRSSRFLGTASPP--------PPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWL 52
Query: 725 RRVTGDGGYPTRQALA-NKGVKKKVVQSLPKFAYADSSPREWLA-------------TTE 588
RR+TG +A NKG+KKK +Q+LPK Y S+ A +TE
Sbjct: 53 RRLTGVNPAAVGEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTE 112
Query: 587 CAICLAEFDAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVAARCQRCG 420
CAIC+ EF G+EIR+LP C H FHV CID WL S SSCPSCR++L V +C RCG
Sbjct: 113 CAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRIL-VPVKCDRCG 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 985,127,686
Number of Sequences: 1393205
Number of extensions: 26398207
Number of successful extensions: 179411
Number of sequences better than 10.0: 1645
Number of HSP's better than 10.0 without gapping: 118690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167002
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57669751843
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
