Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004727A_C02 KMC004727A_c02
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC07424.1| cinnamoyl-CoA reductase [Populus balsamifera sub... 183 1e-45
emb|CAA12276.1| cinnamoyl CoA reductase [Populus balsamifera sub... 183 1e-45
gb|AAG42528.1| cinnamoyl-CoA reductase [Prunus persica] 182 2e-45
gb|AAF43141.1|AF217958_1 cinnamoyl CoA reductase; CCR [Populus t... 182 2e-45
ref|NP_173047.1| cinnamoyl CoA reductase, puitative; protein id:... 178 4e-44
>emb|CAC07424.1| cinnamoyl-CoA reductase [Populus balsamifera subsp. trichocarpa]
Length = 338
Score = 183 bits (465), Expect = 1e-45
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 2/118 (1%)
Frame = -1
Query: 544 ANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCK 365
AN+ QAY VRDVALAHILV+E P ASGRY+CSES LHRGE+VEILAK FPEYP+PTKC
Sbjct: 221 ANSVQAYVHVRDVALAHILVFETPSASGRYLCSESVLHRGEVVEILAKFFPEYPIPTKCS 280
Query: 364 DEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPKQ--EDSIAVK 197
DEKNPR +PY FSNQKL+DLG EFTPV LYETVKSLQEKGHL IPKQ E+S+ ++
Sbjct: 281 DEKNPRKQPYKFSNQKLRDLGFEFTPVKQCLYETVKSLQEKGHLPIPKQAAEESLKIQ 338
>emb|CAA12276.1| cinnamoyl CoA reductase [Populus balsamifera subsp. trichocarpa]
Length = 338
Score = 183 bits (465), Expect = 1e-45
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 2/118 (1%)
Frame = -1
Query: 544 ANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCK 365
AN+ QAY VRDVALAHILV+E P ASGRY+CSES LHRGE+VEILAK FPEYP+PTKC
Sbjct: 221 ANSVQAYVHVRDVALAHILVFETPSASGRYLCSESVLHRGEVVEILAKFFPEYPIPTKCS 280
Query: 364 DEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPKQ--EDSIAVK 197
DEKNPR +PY FSNQKL+DLG EFTPV LYETVKSLQEKGHL IPKQ E+S+ ++
Sbjct: 281 DEKNPRKQPYKFSNQKLRDLGFEFTPVKQCLYETVKSLQEKGHLPIPKQAAEESLKIQ 338
>gb|AAG42528.1| cinnamoyl-CoA reductase [Prunus persica]
Length = 185
Score = 182 bits (463), Expect = 2e-45
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = -1
Query: 544 ANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCK 365
AN+ QAY VRDVALAHILVYE P ASGRY+C+ES LHRG++VEILAK FPEYP+PTKC
Sbjct: 68 ANSLQAYVHVRDVALAHILVYEIPSASGRYLCAESVLHRGDVVEILAKFFPEYPIPTKCS 127
Query: 364 DEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPK-QEDSIAVKS 194
DE PR KPY FSNQKL+DLGLEFTPV LY+TVKSLQEKGHL +PK QEDSI ++S
Sbjct: 128 DEVKPRVKPYKFSNQKLQDLGLEFTPVKQCLYDTVKSLQEKGHLAVPKPQEDSIKIQS 185
>gb|AAF43141.1|AF217958_1 cinnamoyl CoA reductase; CCR [Populus tremuloides]
Length = 337
Score = 182 bits (463), Expect = 2e-45
Identities = 88/116 (75%), Positives = 97/116 (82%)
Frame = -1
Query: 544 ANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCK 365
AN+ QAY VRDVALAHILV+E P ASGRY+CSES LHRGE+VEILAK FPEYP+PTKC
Sbjct: 220 ANSVQAYVHVRDVALAHILVFETPSASGRYLCSESVLHRGEVVEILAKFFPEYPIPTKCS 279
Query: 364 DEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPKQEDSIAVK 197
DEKNPR +PY FSNQKL+DLG EFTPV LYETVKSLQE+GHL IPKQ +VK
Sbjct: 280 DEKNPRKQPYKFSNQKLRDLGFEFTPVKQCLYETVKSLQERGHLPIPKQAAEESVK 335
>ref|NP_173047.1| cinnamoyl CoA reductase, puitative; protein id: At1g15950.1,
supported by cDNA: 34141., supported by cDNA:
gi_12034896, supported by cDNA: gi_12083325, supported
by cDNA: gi_17224972 [Arabidopsis thaliana]
gi|25284024|pir||A86294 hypothetical protein T24D18.5 -
Arabidopsis thaliana gi|6587801|gb|AAF18492.1|AC010924_5
Strong similarity to cinnamoyl CoA reductase gi|2960364
from Populus balsamifera. ESTs gb|N95902, gb|AI992693,
gb|AI995837 come from this gene. [Arabidopsis thaliana]
gi|12083326|gb|AAG48822.1|AF332459_1 putative cinnamoyl
CoA reductase [Arabidopsis thaliana]
gi|17224973|gb|AAL37194.1| cinnamoyl-CoA reductase
[Arabidopsis thaliana] gi|21592916|gb|AAM64866.1|
cinnamoyl CoA reductase, puitative [Arabidopsis
thaliana]
Length = 344
Score = 178 bits (451), Expect = 4e-44
Identities = 86/117 (73%), Positives = 97/117 (82%)
Frame = -1
Query: 544 ANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCK 365
AN TQAY DVRDVALAH+LVYE P ASGRY+ +ES+ HRGE+VEILAK FPEYP+PTKCK
Sbjct: 219 ANLTQAYVDVRDVALAHVLVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCK 278
Query: 364 DEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPKQEDSIAVKS 194
DEKNPRAKPY F+NQK+KDLGLEFT SLY+TVKSLQEKGHL P S + +S
Sbjct: 279 DEKNPRAKPYKFTNQKIKDLGLEFTSTKQSLYDTVKSLQEKGHLAPPPPPPSASQES 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,641,904
Number of Sequences: 1393205
Number of extensions: 9662636
Number of successful extensions: 25622
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 24639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25481
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
