Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004726A_C01 KMC004726A_c01
(847 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199781.1| putative protein; protein id: At5g49700.1 [Arab... 216 3e-55
ref|NP_172901.1| hypothetical protein; protein id: At1g14490.1 [... 186 3e-46
ref|NP_566232.1| expressed protein; protein id: At3g04570.1, sup... 141 1e-32
ref|NP_192942.1| putative DNA-binding protein; protein id: At4g1... 138 1e-31
ref|NP_177776.1| unknown protein; protein id: At1g76500.1 [Arabi... 135 8e-31
>ref|NP_199781.1| putative protein; protein id: At5g49700.1 [Arabidopsis thaliana]
gi|8978267|dbj|BAA98158.1| contains similarity to
AT-hook DNA-binding protein~gene_id:K2I5.6 [Arabidopsis
thaliana]
Length = 276
Score = 216 bits (550), Expect = 3e-55
Identities = 116/190 (61%), Positives = 144/190 (75%), Gaps = 16/190 (8%)
Frame = -3
Query: 845 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTTP-GATVTFHGRFDIL 669
ILEV GNDVV+AI F RRK++G+ +L+GSG+VANVTLRQPS G+T+TFHG+FD+L
Sbjct: 87 ILEVPSGNDVVEAINRFCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLL 146
Query: 668 SINATFLPQQ-----QPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNSPS 504
S++ATFLP P +S F++SLAGPQGQI+GG VAG L++AGTV+V+AASFN+PS
Sbjct: 147 SVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAASFNNPS 206
Query: 503 YHRLPPPEEEAGNSASAG--DVQSPPVSGGGDDQ-------AASCGMSMYSCQL-ASDVI 354
YHRL P EEE +SA G + QSPPVSGGG++ SCG+SMYSC + SDVI
Sbjct: 207 YHRL-PAEEEQKHSAGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYSCHMGGSDVI 265
Query: 353 WAPTARPPPP 324
WAPTAR PPP
Sbjct: 266 WAPTARAPPP 275
>ref|NP_172901.1| hypothetical protein; protein id: At1g14490.1 [Arabidopsis
thaliana] gi|25511630|pir||G86279 F14L17.27 protein -
Arabidopsis thaliana
gi|7262692|gb|AAF43950.1|AC012188_27 Contains similarity
to an AT-hook protein 2 from Arabidopsis thaliana
gb|AJ224119.1
Length = 206
Score = 186 bits (473), Expect = 3e-46
Identities = 103/181 (56%), Positives = 127/181 (69%), Gaps = 7/181 (3%)
Frame = -3
Query: 845 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPS-TTPGATVTFHGRFDIL 669
ILEV GNDVV+A+ F R K +G +L+GSG+VA+VTLRQPS PG+T+TFHG+FD+L
Sbjct: 34 ILEVPSGNDVVEALNRFCRGKAIGFCVLSGSGSVADVTLRQPSPAAPGSTITFHGKFDLL 93
Query: 668 SINATFLP-----QQQPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNSPS 504
S++ATFLP P +S F++SLAGPQG+++GG VAG L+AAGTV+ VA SF +PS
Sbjct: 94 SVSATFLPPLPPTSLSPPVSNFFTVSLAGPQGKVIGGFVAGPLVAAGTVYFVATSFKNPS 153
Query: 503 YHRLPPPEEEAGNSASAGDV-QSPPVSGGGDDQAASCGMSMYSCQLASDVIWAPTARPPP 327
YHRLP EEE NSA + QSPPVSGGG G SMY SDVIW P A+ P
Sbjct: 154 YHRLPATEEEQRNSAEGEEEGQSPPVSGGG-------GESMYVG--GSDVIWDPNAKAPS 204
Query: 326 P 324
P
Sbjct: 205 P 205
>ref|NP_566232.1| expressed protein; protein id: At3g04570.1, supported by cDNA:
15781. [Arabidopsis thaliana]
gi|6175162|gb|AAF04888.1|AC011437_3 hypothetical protein
[Arabidopsis thaliana] gi|21553701|gb|AAM62794.1|
putative DNA-binding protein [Arabidopsis thaliana]
gi|29028876|gb|AAO64817.1| At3g04570 [Arabidopsis
thaliana]
Length = 315
Score = 141 bits (355), Expect = 1e-32
Identities = 77/161 (47%), Positives = 104/161 (63%), Gaps = 10/161 (6%)
Frame = -3
Query: 845 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTT-----PG--ATVTFH 687
++E+A G DV++ +A F+RR+ G+ IL+G+GTVANVTLRQPST PG A +
Sbjct: 111 VMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQ 170
Query: 686 GRFDILSINATFLPQQQPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNSP 507
GRF+ILS+ +FLP P S G +I LAG QGQ+VGG V G LMAAG V ++AA+F++
Sbjct: 171 GRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNA 230
Query: 506 SYHRLPPPEEEA---GNSASAGDVQSPPVSGGGDDQAASCG 393
+Y RLP EEEA G +G V + GGG ++ G
Sbjct: 231 TYERLPLEEEEAAERGGGGGSGGVVPGQLGGGGSPLSSGAG 271
>ref|NP_192942.1| putative DNA-binding protein; protein id: At4g12050.1 [Arabidopsis
thaliana] gi|7485568|pir||T06612 hypothetical protein
F16J13.120 - Arabidopsis thaliana
gi|4586110|emb|CAB40946.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|7267906|emb|CAB78248.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 339
Score = 138 bits (347), Expect = 1e-31
Identities = 74/190 (38%), Positives = 107/190 (55%), Gaps = 18/190 (9%)
Frame = -3
Query: 845 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTTPGATVTFHGRFDILS 666
++E+ G D+V +A F+RR+ G+ +++G+G+V NVT+RQP + PG+ V+ HGRF+ILS
Sbjct: 149 VMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILS 208
Query: 665 INATFLPQQQPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNSPSYHRLPP 486
++ +FLP P + G S+ LAG QGQ+VGG V G L+ +G V V+AASF++ +Y RLP
Sbjct: 209 LSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPL 268
Query: 485 PEEE--------AGNSASAGDVQSPPVSGGGDDQAASCGMSMYSCQLASDVIWAP----- 345
E+E G G + SPP+ G AA L V P
Sbjct: 269 EEDEMQTPVQGGGGGGGGGGGMGSPPMMGQQQAMAAMAAAQGLPPNLLGSVQLPPPQQND 328
Query: 344 -----TARPP 330
T RPP
Sbjct: 329 QQYWSTGRPP 338
>ref|NP_177776.1| unknown protein; protein id: At1g76500.1 [Arabidopsis thaliana]
gi|25348243|pir||H96792 unknown protein F14G6.10
[imported] - Arabidopsis thaliana
gi|12323978|gb|AAG51949.1|AC015450_10 unknown protein;
41834-42742 [Arabidopsis thaliana]
Length = 302
Score = 135 bits (340), Expect = 8e-31
Identities = 83/199 (41%), Positives = 113/199 (56%), Gaps = 25/199 (12%)
Frame = -3
Query: 845 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTTP--------GATVTF 690
+LEV+ G D+V+++ ++RR+ G+SIL+G+GTVANV+LRQP+TT G V
Sbjct: 103 VLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVAL 162
Query: 689 HGRFDILSINATFLPQQQPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNS 510
HGRF+ILS+ T LP P SGG SI L+G QGQ++GG V L+A+G V ++AASF++
Sbjct: 163 HGRFEILSLTGTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSN 222
Query: 509 PSYHRLPPPEEEAGNSASAGDV--------------QSPPVSGGGDDQAASCGMSMYSCQ 372
++ RL P E+E G G+V S P SG G Q MS Y Q
Sbjct: 223 ATFERL-PLEDEGGEGGEGGEVGEGGGGEGGPPPATSSSPPSGAGQGQLRG-NMSGYD-Q 279
Query: 371 LASD---VIWAPTARPPPP 324
A D + W A PP
Sbjct: 280 FAGDPHLLGWGAAAAAAPP 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 789,587,996
Number of Sequences: 1393205
Number of extensions: 20427856
Number of successful extensions: 101912
Number of sequences better than 10.0: 246
Number of HSP's better than 10.0 without gapping: 82862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100176
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
