Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004722A_C01 KMC004722A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04814 dihydrolipoamide S-succinyltransferase homolog F10M2... 184 6e-46
ref|NP_567761.1| putative dihydrolipoamide succinyltransferase; ... 184 6e-46
gb|AAM67267.1| putative dihydrolipoamide succinyltransferase [Ar... 184 6e-46
gb|AAN41326.1| putative dihydrolipoamide succinyltransferase [Ar... 184 6e-46
emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabido... 181 7e-45
>pir||T04814 dihydrolipoamide S-succinyltransferase homolog F10M23.250 -
Arabidopsis thaliana gi|4455214|emb|CAB36537.1| putative
dihydrolipoamide succinyltransferase [Arabidopsis
thaliana] gi|7269544|emb|CAB79546.1| putative
dihydrolipoamide succinyltransferase [Arabidopsis
thaliana]
Length = 511
Score = 184 bits (468), Expect = 6e-46
Identities = 86/100 (86%), Positives = 98/100 (98%)
Frame = -3
Query: 605 ANDGALSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPR 426
AN+G +SIDEMAGG+ T+SNGGVYGSL+STPIINPPQSAILGMHSIVSRPMVVGG+VVPR
Sbjct: 412 ANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPR 471
Query: 425 PMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 306
PMMY+ALTYDHR+IDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 472 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 511
>ref|NP_567761.1| putative dihydrolipoamide succinyltransferase; protein id:
At4g26910.1, supported by cDNA: 101175. [Arabidopsis
thaliana]
Length = 464
Score = 184 bits (468), Expect = 6e-46
Identities = 86/100 (86%), Positives = 98/100 (98%)
Frame = -3
Query: 605 ANDGALSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPR 426
AN+G +SIDEMAGG+ T+SNGGVYGSL+STPIINPPQSAILGMHSIVSRPMVVGG+VVPR
Sbjct: 365 ANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPR 424
Query: 425 PMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 306
PMMY+ALTYDHR+IDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 425 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464
>gb|AAM67267.1| putative dihydrolipoamide succinyltransferase [Arabidopsis
thaliana]
Length = 463
Score = 184 bits (468), Expect = 6e-46
Identities = 86/100 (86%), Positives = 98/100 (98%)
Frame = -3
Query: 605 ANDGALSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPR 426
AN+G +SIDEMAGG+ T+SNGGVYGSL+STPIINPPQSAILGMHSIVSRPMVVGG+VVPR
Sbjct: 364 ANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPR 423
Query: 425 PMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 306
PMMY+ALTYDHR+IDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 424 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463
>gb|AAN41326.1| putative dihydrolipoamide succinyltransferase [Arabidopsis
thaliana]
Length = 463
Score = 184 bits (468), Expect = 6e-46
Identities = 86/100 (86%), Positives = 98/100 (98%)
Frame = -3
Query: 605 ANDGALSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPR 426
AN+G +SIDEMAGG+ T+SNGGVYGSL+STPIINPPQSAILGMHSIVSRPMVVGG+VVPR
Sbjct: 364 ANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPR 423
Query: 425 PMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 306
PMMY+ALTYDHR+IDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 424 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463
>emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana]
Length = 462
Score = 181 bits (459), Expect = 7e-45
Identities = 85/100 (85%), Positives = 96/100 (96%)
Frame = -3
Query: 605 ANDGALSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPR 426
A +G +SIDEMAGG+ T+SNGGVYGSL+STPIINPPQSAILGMHSIV RPMVVGG+VVPR
Sbjct: 363 ATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPMVVGGSVVPR 422
Query: 425 PMMYIALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 306
PMMY+ALTYDHR+IDGREAV+FLRRIKD+VEDP+RLLLDI
Sbjct: 423 PMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 462
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,927,704
Number of Sequences: 1393205
Number of extensions: 11788743
Number of successful extensions: 26255
Number of sequences better than 10.0: 433
Number of HSP's better than 10.0 without gapping: 25385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26088
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
