Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004717A_C01 KMC004717A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564079.1| expressed protein; protein id: At1g19330.1, sup... 82 9e-15
pir||F86326 protein F18O14.5 [imported] - Arabidopsis thaliana g... 82 9e-15
ref|NP_177643.1| hypothetical protein; protein id: At1g75060.1 [... 77 3e-13
gb|AAL79349.1|AC099402_13 Hypothetical protein [Oryza sativa] 56 5e-07
gb|AAL58137.1|AC093093_10 hypothetical protein [Oryza sativa (ja... 56 5e-07
>ref|NP_564079.1| expressed protein; protein id: At1g19330.1, supported by cDNA:
4026. [Arabidopsis thaliana] gi|21593580|gb|AAM65547.1|
unknown [Arabidopsis thaliana]
Length = 247
Score = 81.6 bits (200), Expect = 9e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = -3
Query: 693 ALWRY*RHSNLVDAIPNPSKEQVVDGVQRHFMSQPIDEFQVIMGFVPAAKRLK 535
AL Y RH NLVDAIPNPSKEQ++D VQRHFMSQ +DE QVI+GFV AAKR+K
Sbjct: 176 ALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMK 228
>pir||F86326 protein F18O14.5 [imported] - Arabidopsis thaliana
gi|8778446|gb|AAF79454.1|AC025808_36 F18O14.5
[Arabidopsis thaliana]
Length = 242
Score = 81.6 bits (200), Expect = 9e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = -3
Query: 693 ALWRY*RHSNLVDAIPNPSKEQVVDGVQRHFMSQPIDEFQVIMGFVPAAKRLK 535
AL Y RH NLVDAIPNPSKEQ++D VQRHFMSQ +DE QVI+GFV AAKR+K
Sbjct: 171 ALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMK 223
>ref|NP_177643.1| hypothetical protein; protein id: At1g75060.1 [Arabidopsis
thaliana] gi|25372871|pir||F96780 hypothetical protein
F9E10.9 [imported] - Arabidopsis thaliana
gi|12323907|gb|AAG51933.1|AC013258_27 hypothetical
protein; 20082-21886 [Arabidopsis thaliana]
Length = 242
Score = 76.6 bits (187), Expect = 3e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Frame = -3
Query: 693 ALWRY*RHSNLVDAIPNPSKEQVVDGVQRHFMSQPIDEFQVIMGFVPAAKRLKSTTVCQ 517
AL RY RH NLVDA+PNP+KEQ++D +QRHFMSQ +DE QVI+GFV AA +K CQ
Sbjct: 177 ALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKK--ACQ 233
>gb|AAL79349.1|AC099402_13 Hypothetical protein [Oryza sativa]
Length = 368
Score = 55.8 bits (133), Expect = 5e-07
Identities = 32/54 (59%), Positives = 36/54 (66%)
Frame = -3
Query: 693 ALWRY*RHSNLVDAIPNPSKEQVVDGVQRHFMSQPIDEFQVIMGFVPAAKRLKS 532
ALWRY RH NL DA PNPS+EQ+VD VQRHF+SQ AAKRLK+
Sbjct: 324 ALWRYWRHFNL-DASPNPSREQLVDAVQRHFVSQ-------------AAKRLKT 363
>gb|AAL58137.1|AC093093_10 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 295
Score = 55.8 bits (133), Expect = 5e-07
Identities = 32/54 (59%), Positives = 36/54 (66%)
Frame = -3
Query: 693 ALWRY*RHSNLVDAIPNPSKEQVVDGVQRHFMSQPIDEFQVIMGFVPAAKRLKS 532
ALWRY RH NL DA PNPS+EQ+VD VQRHF+SQ AAKRLK+
Sbjct: 251 ALWRYWRHFNL-DASPNPSREQLVDAVQRHFVSQ-------------AAKRLKT 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,537,278
Number of Sequences: 1393205
Number of extensions: 11621788
Number of successful extensions: 25796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25784
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
