Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004715A_C01 KMC004715A_c01
(380 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_231985.1| conserved hypothetical protein [Vibrio cholerae... 32 1.5
ref|NP_693334.1| hypothetical protein [Oceanobacillus iheyensis ... 32 2.0
gb|AAB34666.2| gag polyprotein [Human T-cell lymphotropic virus ... 30 5.7
gb|ZP_00055767.1| hypothetical protein [Magnetospirillum magneto... 30 7.5
ref|XP_130055.1| chloride intracellular channel 3 [Mus musculus]... 30 9.7
>ref|NP_231985.1| conserved hypothetical protein [Vibrio cholerae]
gi|11281714|pir||C82088 conserved hypothetical protein
VC2355 [imported] - Vibrio cholerae (strain N16961
serogroup O1) gi|9656923|gb|AAF95498.1| conserved
hypothetical protein [Vibrio cholerae]
Length = 257
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/106 (21%), Positives = 45/106 (41%)
Frame = +3
Query: 3 TDKSTQSLSIMWTNIRVRHQSNYTFQRAQPRRRNGPNLTQSG*HIECGVNKLKQQYQWQS 182
T+K Q++ N+ V SN F+ P+R N +T + G K+ + ++
Sbjct: 152 TEKLNQAIEAQGDNVLVNLASNEYFKAVNPKRLNAQIVTPIFKDAKNGQYKIISFFAKKA 211
Query: 183 RGIQFK*Q*NIQIRKIGDVNGINGYHSNLRHTELNPNQFALESKSQ 320
RG+ + +I+ + D+ G N +E P + + + Q
Sbjct: 212 RGMMARYIIENRIKSVKDLEGFNTAGYYFVASESTPTELVFKREEQ 257
>ref|NP_693334.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22778099|dbj|BAC14369.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 366
Score = 32.0 bits (71), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 352 SVWVGICYPILWLLDSKANWLGF 284
SVW GI + WL + +NWLGF
Sbjct: 154 SVWSGILLIVSWLSSNSSNWLGF 176
>gb|AAB34666.2| gag polyprotein [Human T-cell lymphotropic virus type 1]
Length = 72
Score = 30.4 bits (67), Expect = 5.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 230 RGRKRH*WISQ*SSAYRTKP*PIRF---RIQKPKNRVTNSNPNGPPSKPPDPI 379
RG H W++ +AYR +P P + +++K ++ + + PPS P +P+
Sbjct: 17 RGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKSAQLYSSLSLDSPPSPPREPL 69
>gb|ZP_00055767.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 174
Score = 30.0 bits (66), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +2
Query: 296 IRFRIQKPKNRVTNSNPNGPPSKPPDP 376
+R R+++P VT + P PP PP P
Sbjct: 39 VRLRVERPGEEVTAAPPPPPPPPPPPP 65
>ref|XP_130055.1| chloride intracellular channel 3 [Mus musculus]
gi|25021079|ref|XP_203837.1| chloride intracellular
channel 3 [Mus musculus]
Length = 207
Score = 29.6 bits (65), Expect = 9.7
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 6/54 (11%)
Frame = -1
Query: 152 IYPALDVLSTLC---KIGPIPSSWLCS---LESIVTLMPYSYVCPHDA*RLCAF 9
+ P L ++ T+C + PIP+ C L+S + + Y CPH A L A+
Sbjct: 147 LLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAY 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,531,178
Number of Sequences: 1393205
Number of extensions: 7698359
Number of successful extensions: 19541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19509
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
