Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004710A_C01 KMC004710A_c01
(368 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191718.1| putative protein; protein id: At3g61590.1, supp... 120 3e-27
dbj|BAB85274.1| P0684E06.20 [Oryza sativa (japonica cultivar-gro... 105 1e-22
gb|AAN87351.1| proliferating floral organs protein [Lotus japoni... 35 0.18
pir||T50556 stamina pistilloidia protein Stp [imported] - garden... 35 0.18
ref|NP_195667.1| putative protein; protein id: At4g39570.1 [Arab... 31 3.4
>ref|NP_191718.1| putative protein; protein id: At3g61590.1, supported by cDNA:
gi_14423513 [Arabidopsis thaliana]
gi|11357715|pir||T47951 hypothetical protein F2A19.190 -
Arabidopsis thaliana gi|6850850|emb|CAB71089.1| putative
protein [Arabidopsis thaliana]
gi|14423514|gb|AAK62439.1|AF386994_1 putative protein
[Arabidopsis thaliana] gi|23197692|gb|AAN15373.1|
putative protein [Arabidopsis thaliana]
Length = 411
Score = 120 bits (302), Expect = 3e-27
Identities = 53/61 (86%), Positives = 58/61 (94%)
Frame = -2
Query: 367 VFASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIA 188
VFAS G DDL+YIQSYGSPALLTFDM++K W+WSQKCPVTK+FPLQLFTGFCFEPRLEIA
Sbjct: 351 VFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIA 410
Query: 187 P 185
P
Sbjct: 411 P 411
>dbj|BAB85274.1| P0684E06.20 [Oryza sativa (japonica cultivar-group)]
gi|21952888|dbj|BAC06300.1| P0445H04.11 [Oryza sativa
(japonica cultivar-group)]
Length = 406
Score = 105 bits (262), Expect = 1e-22
Identities = 47/59 (79%), Positives = 51/59 (85%)
Frame = -2
Query: 367 VFASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEI 191
VFAS G DDL+YIQSYG+ ALL FD KQWKWS KCPV+KRFPLQLFTGFCFEPRL+I
Sbjct: 346 VFASSGTDDLVYIQSYGATALLAFDTKQKQWKWSAKCPVSKRFPLQLFTGFCFEPRLDI 404
>gb|AAN87351.1| proliferating floral organs protein [Lotus japonicus]
Length = 449
Score = 35.4 bits (80), Expect = 0.18
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 364 FASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRL 197
F G + + I G+ L +D+ K+W+W CP +L GF +EPRL
Sbjct: 375 FECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYAGYDGFELH-GFAYEPRL 429
>pir||T50556 stamina pistilloidia protein Stp [imported] - garden pea
gi|4101570|gb|AAD01204.1| stamina pistilloidia [Pisum
sativum]
Length = 443
Score = 35.4 bits (80), Expect = 0.18
Identities = 19/56 (33%), Positives = 27/56 (47%)
Frame = -2
Query: 364 FASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRL 197
F G + I I GS L +D+ K+W+W CP +L GF ++PRL
Sbjct: 371 FECVGNGEFIVIMIKGSDKGLVYDIGRKRWQWIPPCPYAGYDGFELH-GFAYDPRL 425
>ref|NP_195667.1| putative protein; protein id: At4g39570.1 [Arabidopsis thaliana]
gi|7448264|pir||T09373 hypothetical protein F23K16.200 -
Arabidopsis thaliana gi|5042173|emb|CAB44692.1| putative
protein [Arabidopsis thaliana]
gi|7270941|emb|CAB80620.1| putative protein [Arabidopsis
thaliana]
Length = 395
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 2/81 (2%)
Frame = +2
Query: 101 FNSRTME*MAETCTHVPIETLDPMENKLWSNF--KPRLKAKTSEKL*RKPLSYWALL*PF 274
+ +R++ E+C ++ ++ +P N LW KP K +K +K +S LL P
Sbjct: 72 YETRSLLGRTESCLYLCLQEGNPDPNPLWFTLCMKPDRTLKNGKKKKKKKMSSGNLLIPI 131
Query: 275 PLFNAHVKCEKCRRSVTLNIY 337
P+ N ++ SV +IY
Sbjct: 132 PVPNPPLEHWSGHASVGSDIY 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,065,469
Number of Sequences: 1393205
Number of extensions: 5630822
Number of successful extensions: 13077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13071
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
