Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004709A_C01 KMC004709A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567879.1| putative protein; protein id: At4g31600.1, supp... 151 5e-36
pir||T05110 hypothetical protein F28M20.210 - Arabidopsis thalia... 151 5e-36
ref|XP_218777.1| similar to fringe connection [Drosophila melano... 63 2e-09
ref|XP_125515.2| RIKEN cDNA 6230421J19 [Mus musculus] gi|2633531... 63 2e-09
gb|EAA09384.1| agCP15152 [Anopheles gambiae str. PEST] 62 5e-09
>ref|NP_567879.1| putative protein; protein id: At4g31600.1, supported by cDNA:
gi_14596060, supported by cDNA: gi_17978696 [Arabidopsis
thaliana] gi|14596061|gb|AAK68758.1| putative protein
[Arabidopsis thaliana] gi|17978697|gb|AAL47342.1|
putative protein [Arabidopsis thaliana]
Length = 323
Score = 151 bits (381), Expect = 5e-36
Identities = 72/86 (83%), Positives = 82/86 (94%)
Frame = -3
Query: 521 MGIVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGG 342
MGIVLN+TMFLCT+VNSALTTTIVGVLKGVGSTTLGFVLL GV+VHALNVSGLV+NTAGG
Sbjct: 237 MGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHALNVSGLVVNTAGG 296
Query: 341 VWYSYAKYQQKMSKTVKLVTDVEAHR 264
VWYSYAKY+QK +K KL++D+EAH+
Sbjct: 297 VWYSYAKYRQKKAKPAKLMSDLEAHK 322
>pir||T05110 hypothetical protein F28M20.210 - Arabidopsis thaliana
gi|3281867|emb|CAA19763.1| putative protein [Arabidopsis
thaliana] gi|7270063|emb|CAB79878.1| putative protein
[Arabidopsis thaliana]
Length = 296
Score = 151 bits (381), Expect = 5e-36
Identities = 72/86 (83%), Positives = 82/86 (94%)
Frame = -3
Query: 521 MGIVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGG 342
MGIVLN+TMFLCT+VNSALTTTIVGVLKGVGSTTLGFVLL GV+VHALNVSGLV+NTAGG
Sbjct: 210 MGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHALNVSGLVVNTAGG 269
Query: 341 VWYSYAKYQQKMSKTVKLVTDVEAHR 264
VWYSYAKY+QK +K KL++D+EAH+
Sbjct: 270 VWYSYAKYRQKKAKPAKLMSDLEAHK 295
>ref|XP_218777.1| similar to fringe connection [Drosophila melanogaster] [Rattus
norvegicus]
Length = 457
Score = 63.2 bits (152), Expect = 2e-09
Identities = 27/68 (39%), Positives = 45/68 (65%)
Frame = -3
Query: 521 MGIVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGG 342
+G +N+T CT +NSA+TT+ VGV+K + + T+G V V+ +L ++G+V+NT G
Sbjct: 235 IGCAMNFTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGS 294
Query: 341 VWYSYAKY 318
+ Y AK+
Sbjct: 295 IIYCVAKF 302
>ref|XP_125515.2| RIKEN cDNA 6230421J19 [Mus musculus] gi|26335311|dbj|BAC31356.1|
unnamed protein product [Mus musculus]
gi|26336963|dbj|BAC32165.1| unnamed protein product [Mus
musculus] gi|26338854|dbj|BAC33098.1| unnamed protein
product [Mus musculus]
Length = 422
Score = 63.2 bits (152), Expect = 2e-09
Identities = 27/68 (39%), Positives = 45/68 (65%)
Frame = -3
Query: 521 MGIVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGG 342
+G +N+T CT +NSA+TT+ VGV+K + + T+G V V+ +L ++G+V+NT G
Sbjct: 235 IGCAMNFTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGS 294
Query: 341 VWYSYAKY 318
+ Y AK+
Sbjct: 295 IIYCVAKF 302
>gb|EAA09384.1| agCP15152 [Anopheles gambiae str. PEST]
Length = 576
Score = 61.6 bits (148), Expect = 5e-09
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -3
Query: 521 MGIVLNYTMFLCTVVNSALTTTIVGVLKGVGSTTLGFVLLDGVQVHALNVSGLVINTAGG 342
MG +L+Y++ LCT NSALTTTIVG LK + T +G + LN G+ I+ AG
Sbjct: 285 MGFILSYSVILCTQHNSALTTTIVGCLKNISVTYIGMFIGGDYVFSLLNALGINISVAGS 344
Query: 341 VWYSYAKYQQK 309
+ Y+Y +++K
Sbjct: 345 LLYTYVTFRKK 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,678,857
Number of Sequences: 1393205
Number of extensions: 9192391
Number of successful extensions: 34797
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 33204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34661
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
