Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004707A_C01 KMC004707A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_779125.1| hypothetical protein [Xylella fastidiosa Temecu... 35 0.67
ref|NP_566525.1| expressed protein; protein id: At3g15760.1, sup... 35 0.67
gb|EAA35394.1| hypothetical protein [Neurospora crassa] 35 0.67
ref|NP_779138.1| hypothetical protein [Xylella fastidiosa Temecu... 35 0.88
ref|NP_724173.1| CG31797-PA [Drosophila melanogaster] gi|2294681... 35 0.88
>ref|NP_779125.1| hypothetical protein [Xylella fastidiosa Temecula1]
gi|28056902|gb|AAO28774.1| hypothetical protein [Xylella
fastidiosa Temecula1]
Length = 116
Score = 35.0 bits (79), Expect = 0.67
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = -2
Query: 443 FVFLHFFL*IFCDYAPPFSFFTFFFLTLFYKYRKLEGRVHLGCRLAVMA-LCSELIGHTW 267
F+ +HF ++ YA SFF F F TLF + C L ++A +C L+
Sbjct: 4 FLMVHFIQSVYSKYALIRSFFYFPFATLFINFL-------FSCFLLMLACVCLVLL---- 52
Query: 266 WIVL*IVKKILDNILG*FSYSLSSLVSSELHEQLCVPFFPLFLFCTQNNSLWSIQCSNCS 87
+++ D L S+SLSS V+S LC L++ S C+
Sbjct: 53 -VLVQSTSGFQDYFLHSVSHSLSSPVAS-----LC---------------LYTFAFSLCN 91
Query: 86 CIFTILIMLCY 54
C+F +LC+
Sbjct: 92 CVFRTCHLLCW 102
>ref|NP_566525.1| expressed protein; protein id: At3g15760.1, supported by cDNA:
8259. [Arabidopsis thaliana] gi|11994348|dbj|BAB02307.1|
gene_id:MSJ11.16~unknown protein [Arabidopsis thaliana]
gi|21595761|gb|AAM66129.1| unknown [Arabidopsis
thaliana]
Length = 135
Score = 35.0 bits (79), Expect = 0.67
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 529 MPANRAALYNGILRDRVAQRLAYS 458
MPANR ALYNGILRDR R+ YS
Sbjct: 112 MPANRMALYNGILRDR-DHRVQYS 134
>gb|EAA35394.1| hypothetical protein [Neurospora crassa]
Length = 1562
Score = 35.0 bits (79), Expect = 0.67
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 448 WFLFFFTFFCEYSVIMLLPFLFLLFFSLPFFTSI 347
W +F+F FC++ + + + ++L F+L FFTSI
Sbjct: 1148 WAIFWFQIFCDFDISYIFDYTYILMFNL-FFTSI 1180
>ref|NP_779138.1| hypothetical protein [Xylella fastidiosa Temecula1]
gi|28056915|gb|AAO28787.1| hypothetical protein [Xylella
fastidiosa Temecula1]
Length = 131
Score = 34.7 bits (78), Expect = 0.88
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = -2
Query: 443 FVFLHFFL*IFCDYAPPFSFFTFFFLTLFYKYRKLEGRVHLGCRLAVMA-LCSELIGHTW 267
F+ +HF ++ YA SFF F F TLF + C L ++A +C L+
Sbjct: 19 FLMVHFIQSVYSKYALIRSFFYFPFATLFINFL-------FSCFLLMLACVCLVLL---- 67
Query: 266 WIVL*IVKKILDNILG*FSYSLSSLVSSELHEQLCVPFFPLFLFCTQNNSLWSIQCSNCS 87
+++ D L S+SLSS V+S LC L++ S C+
Sbjct: 68 -VLVQPTSGFQDYFLHSVSHSLSSPVAS-----LC---------------LYTFAFSLCN 106
Query: 86 CIFTILIMLCY 54
C+F +LC+
Sbjct: 107 CVFRTCHLLCW 117
>ref|NP_724173.1| CG31797-PA [Drosophila melanogaster] gi|22946817|gb|AAF53778.2|
CG31797-PA [Drosophila melanogaster]
Length = 868
Score = 34.7 bits (78), Expect = 0.88
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 357 KKGKEKKSKKRKGRSIITEYSQKKVKKNKNQNQQ 458
KK +EK +K+KG+ TE ++KVKK K +N++
Sbjct: 437 KKKREKAKEKKKGKDKETEKKREKVKKKKEKNKE 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,510,056
Number of Sequences: 1393205
Number of extensions: 10339180
Number of successful extensions: 35893
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 30489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34813
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
