Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004701A_C01 KMC004701A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191048.1| putative protein; protein id: At3g54880.1 [Arab... 81 8e-15
dbj|BAC45116.1| P0434A03.11 [Oryza sativa (japonica cultivar-gro... 72 4e-12
gb|AAC32154.1| hypothetical protein [Picea mariana] 68 5e-11
gb|AAC32155.1| hypothetical protein [Picea mariana] 68 5e-11
pir||T51958 hypothetical protein [imported] - Picea mariana gi|2... 68 5e-11
>ref|NP_191048.1| putative protein; protein id: At3g54880.1 [Arabidopsis thaliana]
gi|7486335|pir||T06732 hypothetical protein F28P10.140 -
Arabidopsis thaliana gi|4678305|emb|CAB41096.1| putative
protein [Arabidopsis thaliana]
Length = 112
Score = 80.9 bits (198), Expect = 8e-15
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = -3
Query: 499 KDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWYDEEGIFD 362
KD IISWST+YE+LLST+EPF+E IPLPEMVDFLVDIWYD EG++D
Sbjct: 68 KDQIISWSTTYEDLLSTHEPFSESIPLPEMVDFLVDIWYD-EGLYD 112
>dbj|BAC45116.1| P0434A03.11 [Oryza sativa (japonica cultivar-group)]
Length = 149
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/51 (62%), Positives = 42/51 (81%)
Frame = -3
Query: 514 PPREGKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWYDEEGIFD 362
P ++PIISW T+Y++LLST+E F +PIPL EMVDFLVDIW+ EEG++D
Sbjct: 100 PKEASQEPIISWCTTYDDLLSTSERFPQPIPLSEMVDFLVDIWH-EEGLYD 149
>gb|AAC32154.1| hypothetical protein [Picea mariana]
Length = 52
Score = 68.2 bits (165), Expect = 5e-11
Identities = 28/49 (57%), Positives = 41/49 (83%)
Frame = -3
Query: 508 REGKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWYDEEGIFD 362
R+ ++P++SW+T+YE LL TN PF + IPL EMVDFLVD+W ++EG++D
Sbjct: 5 RQLREPVLSWNTTYESLLGTNRPFPQLIPLSEMVDFLVDVW-EQEGLYD 52
>gb|AAC32155.1| hypothetical protein [Picea mariana]
Length = 50
Score = 68.2 bits (165), Expect = 5e-11
Identities = 28/49 (57%), Positives = 41/49 (83%)
Frame = -3
Query: 508 REGKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWYDEEGIFD 362
R+ ++P++SW+T+YE LL TN PF + IPL EMVDFLVD+W ++EG++D
Sbjct: 3 RQLREPVLSWNTTYESLLGTNRPFPQLIPLSEMVDFLVDVW-EQEGLYD 50
>pir||T51958 hypothetical protein [imported] - Picea mariana
gi|2982243|gb|AAC32109.1| hypothetical protein [Picea
mariana]
Length = 158
Score = 68.2 bits (165), Expect = 5e-11
Identities = 28/49 (57%), Positives = 41/49 (83%)
Frame = -3
Query: 508 REGKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWYDEEGIFD 362
R+ ++P++SW+T+YE LL TN PF + IPL EMVDFLVD+W ++EG++D
Sbjct: 111 RQLREPVLSWNTTYESLLGTNRPFPQLIPLSEMVDFLVDVW-EQEGLYD 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,421,792
Number of Sequences: 1393205
Number of extensions: 8416626
Number of successful extensions: 16804
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16646
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
