Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004699A_C01 KMC004699A_c01
(1161 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07367 thioredoxin-like protein CDSP32, chloroplast - potat... 400 e-110
ref|NP_177735.1| chloroplast drought-induced stress protein, put... 376 e-103
gb|AAM63182.1| chloroplast drought-induced stress protein, putat... 374 e-102
gb|AAF14217.1|AF107490_1 thioredoxin [Fasciola hepatica] 59 1e-07
emb|CAB96931.1| thioredoxin h [Triticum aestivum] gi|9502274|gb|... 59 1e-07
>pir||T07367 thioredoxin-like protein CDSP32, chloroplast - potato
gi|2582822|emb|CAA71103.1| CDSP32 protein (Chloroplast
Drought-induced Stress Protein of 32kDa) [Solanum
tuberosum]
Length = 296
Score = 400 bits (1028), Expect = e-110
Identities = 203/299 (67%), Positives = 235/299 (77%), Gaps = 8/299 (2%)
Frame = -1
Query: 1140 MATITTSNFICKPP--------LSPSTHRKLLLRSSSLSITSTLTKNKTPIQLRASHSHI 985
MAT+T NF+ KP +SPS + S SI L NK + I
Sbjct: 1 MATLT--NFLLKPSPNLASITKISPSLYSNFPFEKSKQSIFKNLKTNKPLL--------I 50
Query: 984 TKATAASSGTKKAERDERVQRVHSIEEFDSALLSAKDKLVVVEYALSDSSESSEIYPFLV 805
TKATAA KK + ERVQ+V+S+EE D AL AK++LVVVE+A DS S IYPF+V
Sbjct: 51 TKATAAPDVEKKVAKSERVQKVNSMEELDEALKKAKNRLVVVEFAGKDSERSKNIYPFMV 110
Query: 804 ELSRTCNDVEFLLVMGDESDKTKELCKREKVDKVPHFTFYKSREKIHEEDAIGPDMLVGD 625
LS+TCNDV+FLLV+GDE++KTK LC+REK+DKVPHF FYKS EKIHEE+ IGPD+L GD
Sbjct: 111 NLSKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDLLAGD 170
Query: 624 VLYYGDSHSAVVQLHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSM 445
VLYYGDSHS VVQLHSREDVEK+I+DHK+D KL+VLDVGLKHCGPCVKVYPTVIKLS+ M
Sbjct: 171 VLYYGDSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQM 230
Query: 444 ADTVVFARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 268
ADTVVFARMNGDENDSCMQFL+DM+V++VPTFLFIRDG+I GRYVGSGKGELIGEILRY
Sbjct: 231 ADTVVFARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRY 289
>ref|NP_177735.1| chloroplast drought-induced stress protein, putative; protein id:
At1g76080.1, supported by cDNA: 20321. [Arabidopsis
thaliana] gi|25405001|pir||A96789 protein T23E18.2
[imported] - Arabidopsis thaliana
gi|6573731|gb|AAF17651.1|AC009978_27 T23E18.2
[Arabidopsis thaliana] gi|14270247|emb|CAC39419.1|
plastid thioredoxin [Arabidopsis thaliana]
Length = 302
Score = 376 bits (965), Expect = e-103
Identities = 192/294 (65%), Positives = 232/294 (78%), Gaps = 7/294 (2%)
Frame = -1
Query: 1128 TTSNFICKPPLSPSTHRKLLLRSSSLSI-----TSTLTKNKTPIQLRASHSHITKATAAS 964
T +NF+ KP + + S+S + T+ L + K + R + KA AAS
Sbjct: 3 TVANFLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKN-LPKRLFSAVKIKAGAAS 61
Query: 963 SGT--KKAERDERVQRVHSIEEFDSALLSAKDKLVVVEYALSDSSESSEIYPFLVELSRT 790
G DE+VQ++HS EEFD AL +AK KLVV E+A S S +S++IYPF+VELSRT
Sbjct: 62 PGKVGTPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMVELSRT 121
Query: 789 CNDVEFLLVMGDESDKTKELCKREKVDKVPHFTFYKSREKIHEEDAIGPDMLVGDVLYYG 610
CNDV FLLVMGDESDKT+ELC+REK++KVPHF+FYKS EKIHEE+ I PD L+GDVLYYG
Sbjct: 122 CNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIEPDQLMGDVLYYG 181
Query: 609 DSHSAVVQLHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSMADTVV 430
D+HSAVVQLH R DVEKLI++++ KL+VLDVGLKHCGPCVKVYPTV+KLSRSM++TVV
Sbjct: 182 DNHSAVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLKLSRSMSETVV 241
Query: 429 FARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 268
FARMNGDENDSCM+FL+DM V++VPTFLFIRDG+IRGRYVGSGKGELIGEILRY
Sbjct: 242 FARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGEIRGRYVGSGKGELIGEILRY 295
>gb|AAM63182.1| chloroplast drought-induced stress protein, putative [Arabidopsis
thaliana]
Length = 302
Score = 374 bits (960), Expect = e-102
Identities = 190/294 (64%), Positives = 231/294 (77%), Gaps = 7/294 (2%)
Frame = -1
Query: 1128 TTSNFICKPPLSPSTHRKLLLRSSSLSI-----TSTLTKNKTPIQLRASHSHITKATAAS 964
T +NF+ KP + + S+S + T+ L + K + R + KA AAS
Sbjct: 3 TVANFLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKN-LPKRLFSAVKIKAGAAS 61
Query: 963 SGT--KKAERDERVQRVHSIEEFDSALLSAKDKLVVVEYALSDSSESSEIYPFLVELSRT 790
G DE+VQ++HS EEFD AL +AK +LVV E+A S S +S++IYPF+VELSRT
Sbjct: 62 PGKVGTPPANDEKVQKIHSGEEFDEALKNAKSRLVVAEFATSKSDQSNKIYPFMVELSRT 121
Query: 789 CNDVEFLLVMGDESDKTKELCKREKVDKVPHFTFYKSREKIHEEDAIGPDMLVGDVLYYG 610
CNDV FLLVMGDESDKT+ELC+REK++KVPHF+FYKS EKIHEE+ I PD L+GDVLYYG
Sbjct: 122 CNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGIEPDQLMGDVLYYG 181
Query: 609 DSHSAVVQLHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSMADTVV 430
D+HS VVQLH R DVEKLI++++ KL+VLDVGLKHCGPCVKVYPTV+KLSRSM++TVV
Sbjct: 182 DNHSTVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVYPTVLKLSRSMSETVV 241
Query: 429 FARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 268
FARMNGDENDSCM+FL+DM V++VPTFLFIRDG+IRGRYVGSGKGELIGEILRY
Sbjct: 242 FARMNGDENDSCMEFLKDMNVIEVPTFLFIRDGEIRGRYVGSGKGELIGEILRY 295
>gb|AAF14217.1|AF107490_1 thioredoxin [Fasciola hepatica]
Length = 104
Score = 59.3 bits (142), Expect = 1e-07
Identities = 35/106 (33%), Positives = 62/106 (58%)
Frame = -1
Query: 585 LHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSMADTVVFARMNGDE 406
L + D+EKLI ++K +L+V+D + CGPC + P V L++ + + V FA+++ D+
Sbjct: 4 LRTAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE-VEFAKVDVDQ 60
Query: 405 NDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEILRY 268
N+ V +PTF+FI+DG+ R+ G+ + +L I R+
Sbjct: 61 NEEAAA---KYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRH 103
>emb|CAB96931.1| thioredoxin h [Triticum aestivum] gi|9502274|gb|AAF88067.1|
thioredoxin H [Triticum aestivum]
Length = 125
Score = 58.9 bits (141), Expect = 1e-07
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = -1
Query: 594 VVQLHSREDVEKLIEDHKVDSKLVVLDVGLKHCGPCVKVYPTVIKLSRSMADTVVFARMN 415
V+ +HS E IE+ KLVV+D CGPC + P L++ VF +++
Sbjct: 18 VISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKF-PAAVFLKVD 76
Query: 414 GDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYVGSGKGELIGEI 277
DE S + V +PTFLF+++G ++ R VG+ K EL ++
Sbjct: 77 VDELKSIAE---QFSVEAMPTFLFMKEGDVKDRVVGAIKEELTNKV 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,053,940,884
Number of Sequences: 1393205
Number of extensions: 25924978
Number of successful extensions: 120165
Number of sequences better than 10.0: 792
Number of HSP's better than 10.0 without gapping: 98701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116917
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 71654580342
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
