Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004698A_C01 KMC004698A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_577877.1| hypothetical protein [Pyrococcus furiosus DSM 3... 35 0.48
sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdS... 32 4.1
ref|ZP_00123882.1| hypothetical protein [Pseudomonas syringae pv... 31 7.0
dbj|BAC16202.1| hypothetical protein~predicted by FGENESH etc. [... 31 9.1
>ref|NP_577877.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
gi|18892071|gb|AAL80272.1| hypothetical protein
[Pyrococcus furiosus DSM 3638]
Length = 190
Score = 35.0 bits (79), Expect = 0.48
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = -1
Query: 364 WRDRLLTVRGRLVRSLGFILARNQMERAFFLFMFVWGWYINIIRNRNQKR*NQLTNPNWV 185
W ++T G L+ +G LARN++ + +FV GW + II + K + P ++
Sbjct: 111 WAFFIITSIGMLITGIGIGLARNRIVLYLTIGIFVVGWILGIIAMKTFK---GVAIPEFI 167
Query: 184 *DCFLHDFSATAFTLFHFHVFL 119
A +FTL+H+ + L
Sbjct: 168 --------GAISFTLWHYIILL 181
>sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdSpc97)
gi|15072754|emb|CAC47949.1| Spc97 protein [Dictyostelium
discoideum]
Length = 1177
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 335 SSHCKQPISPLLSFIHLLRFALLHFHANR*FHFL 436
SS+ K +S LLSF HLLR ++HF N ++ +
Sbjct: 813 SSYNKPGLSTLLSFTHLLRHRMIHFLQNLEYYMM 846
>ref|ZP_00123882.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 493
Score = 31.2 bits (69), Expect = 7.0
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -1
Query: 391 AK*VYE*Q*WRDRLLTVRGRLVRSLGFILARNQMERA 281
A+ +E Q WR T RG+L+R LG ++A N+ + A
Sbjct: 52 AQKAFEGQAWRGLTATARGKLLRKLGDLIAENKEQLA 88
>dbj|BAC16202.1| hypothetical protein~predicted by FGENESH etc. [Oryza sativa
(japonica cultivar-group)]
Length = 787
Score = 30.8 bits (68), Expect = 9.1
Identities = 21/68 (30%), Positives = 30/68 (43%)
Frame = -3
Query: 254 LVYKYNSQSKSKAVESINQSKLGLGLFLT*FFSHSLYSFSFPRFSHQVLRCVACSPQQYN 75
L+ KY Q+K ES + K LG F S + + H +L CV C +
Sbjct: 436 LLDKYQWQNKLGQYESSSWLKKALG-----FVSFKIGQCCYKPVFHFMLYCVRCMMRWPT 490
Query: 74 ICSWCYMI 51
IC CY++
Sbjct: 491 ICCPCYVV 498
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,139,670
Number of Sequences: 1393205
Number of extensions: 8328918
Number of successful extensions: 23091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23083
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
