Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004697A_C02 KMC004697A_c02
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33076.1| hypothetical protein [Macaca fascicularis] 27 4.5
dbj|BAB19002.1| hypothetical protein [Macaca fascicularis] 26 9.6
>dbj|BAB33076.1| hypothetical protein [Macaca fascicularis]
Length = 333
Score = 26.9 bits (58), Expect(2) = 4.5
Identities = 27/88 (30%), Positives = 40/88 (44%), Gaps = 1/88 (1%)
Frame = +3
Query: 393 SSLKSQKVWHSTTNSQTNIALWTTHSSFQ*QPEQ*IKHDYHHLNSDMKC*RTIIE*KLKH 572
S L S +W S T I+ H F PE HDYHHL + +C + L H
Sbjct: 242 SHLSSITMWFSLALIITTISHCGYHLPFLPSPEF---HDYHHLKFN-QCYGVL--GVLDH 295
Query: 573 *IENDLVMESTKV-KIHNILMKFSNLRD 653
D++ + TK + H +L+ F+ L +
Sbjct: 296 LHGTDIMFKQTKAYERHVLLLGFTPLSE 323
Score = 24.6 bits (52), Expect(2) = 4.5
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +1
Query: 160 HRIFHHWSFKIVINSSYQSVTSIICLKELFIGLVSMIVLNLL 285
HR+ HH +F I+ + T+ I + L+ + +V N+L
Sbjct: 190 HRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHVVSNML 231
>dbj|BAB19002.1| hypothetical protein [Macaca fascicularis]
Length = 333
Score = 25.8 bits (55), Expect(2) = 9.6
Identities = 17/43 (39%), Positives = 19/43 (43%)
Frame = +3
Query: 393 SSLKSQKVWHSTTNSQTNIALWTTHSSFQ*QPEQ*IKHDYHHL 521
S L S +W S T I+ H F PE HDYHHL
Sbjct: 242 SHLSSITMWFSLALIITTISHCGYHLPFLPSPEF---HDYHHL 281
Score = 24.6 bits (52), Expect(2) = 9.6
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +1
Query: 160 HRIFHHWSFKIVINSSYQSVTSIICLKELFIGLVSMIVLNLL 285
HR+ HH +F I+ + T+ I + L+ + +V N+L
Sbjct: 190 HRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHVVSNML 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,850,915
Number of Sequences: 1393205
Number of extensions: 9454814
Number of successful extensions: 16629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16623
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
