Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004693A_C01 KMC004693A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD45425.1| gibberellin 2-oxidase [Pisum sativum] 176 2e-43
gb|AAF13735.1|AF101383_1 gibberellin 2 beta-hydroxylase [Pisum s... 176 2e-43
gb|AAF08609.1|AF056935_1 gibberellin 2-beta-hydroxylase [Pisum s... 176 2e-43
dbj|BAB12442.1| gibberellin 2-oxidase No1 [Lactuca sativa] 173 1e-42
emb|CAC83090.1| gibberellin 2-oxidase [Cucurbita maxima] 173 1e-42
>gb|AAD45425.1| gibberellin 2-oxidase [Pisum sativum]
Length = 322
Score = 176 bits (446), Expect = 2e-43
Identities = 86/106 (81%), Positives = 93/106 (87%)
Frame = -3
Query: 579 DRTWISVPSDHNSFFINVGDSLQVMTNGRFRSVRHRVLANGFKSRLSMIYFGGPPLSQKI 400
D +WISVP DH+SFFINVGDSLQVMTNGRF+SVRHRVLANG RLSMIYF GPPLS+KI
Sbjct: 218 DGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKI 277
Query: 399 APLPCLMKGNESSLYKEFTWYEYKKSAYASRLADNRLGNFERITAS 262
APLP LMKG E SLYKEFTW+EYK S Y SRLADNRLGN+ERI A+
Sbjct: 278 APLPSLMKGKE-SLYKEFTWFEYKSSTYGSRLADNRLGNYERIAAT 322
>gb|AAF13735.1|AF101383_1 gibberellin 2 beta-hydroxylase [Pisum sativum]
Length = 327
Score = 176 bits (446), Expect = 2e-43
Identities = 86/106 (81%), Positives = 93/106 (87%)
Frame = -3
Query: 579 DRTWISVPSDHNSFFINVGDSLQVMTNGRFRSVRHRVLANGFKSRLSMIYFGGPPLSQKI 400
D +WISVP DH+SFFINVGDSLQVMTNGRF+SVRHRVLANG RLSMIYF GPPLS+KI
Sbjct: 223 DGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKI 282
Query: 399 APLPCLMKGNESSLYKEFTWYEYKKSAYASRLADNRLGNFERITAS 262
APLP LMKG E SLYKEFTW+EYK S Y SRLADNRLGN+ERI A+
Sbjct: 283 APLPSLMKGKE-SLYKEFTWFEYKSSTYGSRLADNRLGNYERIAAT 327
>gb|AAF08609.1|AF056935_1 gibberellin 2-beta-hydroxylase [Pisum sativum]
Length = 327
Score = 176 bits (446), Expect = 2e-43
Identities = 86/106 (81%), Positives = 93/106 (87%)
Frame = -3
Query: 579 DRTWISVPSDHNSFFINVGDSLQVMTNGRFRSVRHRVLANGFKSRLSMIYFGGPPLSQKI 400
D +WISVP DH+SFFINVGDSLQVMTNGRF+SVRHRVLANG RLSMIYF GPPLS+KI
Sbjct: 223 DGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKI 282
Query: 399 APLPCLMKGNESSLYKEFTWYEYKKSAYASRLADNRLGNFERITAS 262
APLP LMKG E SLYKEFTW+EYK S Y SRLADNRLGN+ERI A+
Sbjct: 283 APLPSLMKGKE-SLYKEFTWFEYKSSTYGSRLADNRLGNYERIAAT 327
>dbj|BAB12442.1| gibberellin 2-oxidase No1 [Lactuca sativa]
Length = 337
Score = 173 bits (439), Expect = 1e-42
Identities = 81/106 (76%), Positives = 97/106 (91%)
Frame = -3
Query: 579 DRTWISVPSDHNSFFINVGDSLQVMTNGRFRSVRHRVLANGFKSRLSMIYFGGPPLSQKI 400
D +W+SVP+D +SFFINVGDSLQVMTNGRF+SV+HRV+AN KSR+SMIYFGGPPLS+KI
Sbjct: 232 DGSWMSVPADSDSFFINVGDSLQVMTNGRFKSVKHRVVANSTKSRVSMIYFGGPPLSEKI 291
Query: 399 APLPCLMKGNESSLYKEFTWYEYKKSAYASRLADNRLGNFERITAS 262
APLP L++G E SLYKEFTW+EYKKSA+ +RLADNRLG FE+ITA+
Sbjct: 292 APLPSLIQGEEDSLYKEFTWFEYKKSAFNTRLADNRLGLFEKITAT 337
>emb|CAC83090.1| gibberellin 2-oxidase [Cucurbita maxima]
Length = 321
Score = 173 bits (439), Expect = 1e-42
Identities = 84/106 (79%), Positives = 92/106 (86%)
Frame = -3
Query: 579 DRTWISVPSDHNSFFINVGDSLQVMTNGRFRSVRHRVLANGFKSRLSMIYFGGPPLSQKI 400
D WISVP DH+SFFINVGDSLQVMTNGRF+SV+HRVL N KSR+SMIYFGGPPLS+KI
Sbjct: 216 DGNWISVPPDHSSFFINVGDSLQVMTNGRFKSVKHRVLTNSSKSRVSMIYFGGPPLSEKI 275
Query: 399 APLPCLMKGNESSLYKEFTWYEYKKSAYASRLADNRLGNFERITAS 262
APL LM+G E SLYKEFTW+EYK+SAY SRLADNRL FERI AS
Sbjct: 276 APLASLMQGEERSLYKEFTWFEYKRSAYNSRLADNRLVPFERIAAS 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,672,227
Number of Sequences: 1393205
Number of extensions: 9846949
Number of successful extensions: 19930
Number of sequences better than 10.0: 592
Number of HSP's better than 10.0 without gapping: 19382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
