Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004690A_C01 KMC004690A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum... 50 2e-05
emb|CAC33010.1| S locus F-box (SLF)-S2 protein [Antirrhinum hisp... 45 3e-04
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 33 2.2
ref|NP_704236.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.2
ref|XP_232342.1| similar to CD163 antigen [Mus musculus] [Rattus... 32 3.8
>emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum hispanicum]
Length = 376
Score = 49.7 bits (117), Expect = 2e-05
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = -2
Query: 447 FDVWVMKDHCDEGSWMKQYSVGHREVIYKLVGFYGSHHFGSIEDNEG----LVHNSKQIK 280
FD+WVMK + SW KQY +G + V+ V + S +ED G + +IK
Sbjct: 289 FDIWVMKQYGVRESWTKQYVIGPQVVVCSHV-CWKSDECLIVEDGNGQLVSCAFRTNEIK 347
Query: 279 DLQVYGMCESLRATRYMESLVSLHR 205
L +Y + E+LR ESL+SL+R
Sbjct: 348 KLPIYAVEETLRVLIVDESLISLNR 372
>emb|CAC33010.1| S locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
gi|13161540|emb|CAC33022.1| SLF-S2 protein [Antirrhinum
hispanicum]
Length = 376
Score = 45.4 bits (106), Expect = 3e-04
Identities = 29/89 (32%), Positives = 45/89 (49%), Gaps = 4/89 (4%)
Frame = -2
Query: 459 DVKGFDVWVMKDHCDEGSWMKQYSVGHREVIYKLVGFYGSHHFGSIEDNEG----LVHNS 292
D + FD+WVM + SW KQY +G + V+ V + +ED G +
Sbjct: 285 DPELFDIWVMNQYGVRESWTKQYVIGPQVVVCSHVCWKNDECL-IVEDGNGQLVSCAFRT 343
Query: 291 KQIKDLQVYGMCESLRATRYMESLVSLHR 205
+I+ L +Y + E+LR ESL+SL+R
Sbjct: 344 NKIEKLPIYAVEETLRVLIVDESLISLNR 372
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 32.7 bits (73), Expect = 2.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 486 GVIVHPVRGDVKGFDVWVMKDHCDEGSWMKQYSVG 382
G + V G+ D+WVMK + + SW K+YS+G
Sbjct: 295 GCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIG 329
>ref|NP_704236.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498974|emb|CAD51053.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 317
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/66 (24%), Positives = 40/66 (60%)
Frame = -2
Query: 288 QIKDLQVYGMCESLRATRYMESLVSLHRGNEFSGQFVSCSSVPDLLPNQPRNYLVSLSQK 109
Q+ ++++ ESL+++ Y E + ++ GN+ S + + ++VP ++P+ L ++ ++
Sbjct: 47 QLSNIRILSEVESLQSSNYSEVMKNVKDGNDSSSEELDNTNVP---TSKPKKKLSAVFKE 103
Query: 108 MKTFLK 91
KTF +
Sbjct: 104 NKTFFQ 109
>ref|XP_232342.1| similar to CD163 antigen [Mus musculus] [Rattus norvegicus]
Length = 1145
Score = 32.0 bits (71), Expect = 3.8
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 158 SGTEEHETNCPLNSF--PLCSETRLSMYLVALNDSH 259
+GTEEH +CP+ + P+CS+ +++ + + N SH
Sbjct: 642 TGTEEHIGDCPMTALGTPMCSDGQVASVICSGNQSH 677
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,510,856
Number of Sequences: 1393205
Number of extensions: 9181034
Number of successful extensions: 18491
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18488
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
