Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004688A_C01 KMC004688A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566364.1| expressed protein; protein id: At3g09970.1, sup... 184 1e-45
gb|AAM67172.1| unknown [Arabidopsis thaliana] 184 1e-45
gb|AAL87332.1| unknown protein [Arabidopsis thaliana] 184 1e-45
gb|AAF04427.1|AC010927_20 unknown protein [Arabidopsis thaliana] 168 5e-41
ref|NP_566363.1| expressed protein; protein id: At3g09960.1, sup... 168 5e-41
>ref|NP_566364.1| expressed protein; protein id: At3g09970.1, supported by cDNA:
97694. [Arabidopsis thaliana]
gi|6143879|gb|AAF04426.1|AC010927_19 unknown protein
[Arabidopsis thaliana] gi|23297516|gb|AAN12986.1|
unknown protein [Arabidopsis thaliana]
Length = 309
Score = 184 bits (466), Expect = 1e-45
Identities = 90/122 (73%), Positives = 104/122 (84%), Gaps = 1/122 (0%)
Frame = -1
Query: 639 DLVWVHEEDNVFINTDDGVKCCKLIAVHAGLEKGD-VNEQLKCLKVRDTRIPKVQALSGR 463
++VWVHEED+V I T++G+K CKLIAVHAGLEKG+ V EQLK L+ +DT I K+Q LSGR
Sbjct: 186 NMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGR 245
Query: 462 KNVWDIPEELRASPTIIVSGHHAKLHIDGYRLIIDEGGGFKDKPVAAVVLPSKKIIRDTD 283
KNVWDIP+EL T++VSGHH KLHIDG RLIIDEGGGF DKPVAA+VLPSKKIIRDTD
Sbjct: 246 KNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKIIRDTD 305
Query: 282 VL 277
L
Sbjct: 306 NL 307
>gb|AAM67172.1| unknown [Arabidopsis thaliana]
Length = 309
Score = 184 bits (466), Expect = 1e-45
Identities = 90/122 (73%), Positives = 104/122 (84%), Gaps = 1/122 (0%)
Frame = -1
Query: 639 DLVWVHEEDNVFINTDDGVKCCKLIAVHAGLEKGD-VNEQLKCLKVRDTRIPKVQALSGR 463
++VWVHEED+V I T++G+K CKLIAVHAGLEKG+ V EQLK L+ +DT I K+Q LSGR
Sbjct: 186 NMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGR 245
Query: 462 KNVWDIPEELRASPTIIVSGHHAKLHIDGYRLIIDEGGGFKDKPVAAVVLPSKKIIRDTD 283
KNVWDIP+EL T++VSGHH KLHIDG RLIIDEGGGF DKPVAA+VLPSKKIIRDTD
Sbjct: 246 KNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKIIRDTD 305
Query: 282 VL 277
L
Sbjct: 306 NL 307
>gb|AAL87332.1| unknown protein [Arabidopsis thaliana]
Length = 151
Score = 184 bits (466), Expect = 1e-45
Identities = 90/122 (73%), Positives = 104/122 (84%), Gaps = 1/122 (0%)
Frame = -1
Query: 639 DLVWVHEEDNVFINTDDGVKCCKLIAVHAGLEKGD-VNEQLKCLKVRDTRIPKVQALSGR 463
++VWVHEED+V I T++G+K CKLIAVHAGLEKG+ V EQLK L+ +DT I K+Q LSGR
Sbjct: 28 NMVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQHLSGR 87
Query: 462 KNVWDIPEELRASPTIIVSGHHAKLHIDGYRLIIDEGGGFKDKPVAAVVLPSKKIIRDTD 283
KNVWDIP+EL T++VSGHH KLHIDG RLIIDEGGGF DKPVAA+VLPSKKIIRDTD
Sbjct: 88 KNVWDIPQELDDKHTVVVSGHHGKLHIDGMRLIIDEGGGFPDKPVAAIVLPSKKIIRDTD 147
Query: 282 VL 277
L
Sbjct: 148 NL 149
>gb|AAF04427.1|AC010927_20 unknown protein [Arabidopsis thaliana]
Length = 310
Score = 168 bits (426), Expect = 5e-41
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = -1
Query: 639 DLVWVHEEDNVFINTDDGVKCCKLIAVHAGLE-KGDVNEQLKCLKVRDTRIPKVQALSGR 463
++VWVH+ED+V I T++G+ CKLIAVHAGLE K +V EQLK L+ +DT IP++Q L+GR
Sbjct: 187 NMVWVHKEDDVCIETEEGLTHCKLIAVHAGLETKNNVEEQLKLLRDKDTSIPRIQPLTGR 246
Query: 462 KNVWDIPEELRASPTIIVSGHHAKLHIDGYRLIIDEGGGFKDKPVAAVVLPSKKIIRDTD 283
K VW IP+EL TI+VSGHH KLHIDG RLIIDEGGG+ D P+AA+VLPSKKIIRDTD
Sbjct: 247 KTVWGIPQELDDKKTIVVSGHHGKLHIDGLRLIIDEGGGYTDTPLAAIVLPSKKIIRDTD 306
>ref|NP_566363.1| expressed protein; protein id: At3g09960.1, supported by cDNA:
155078. [Arabidopsis thaliana]
gi|21553642|gb|AAM62735.1| unknown [Arabidopsis
thaliana]
Length = 311
Score = 168 bits (426), Expect = 5e-41
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = -1
Query: 639 DLVWVHEEDNVFINTDDGVKCCKLIAVHAGLE-KGDVNEQLKCLKVRDTRIPKVQALSGR 463
++VWVH+ED+V I T++G+ CKLIAVHAGLE K +V EQLK L+ +DT IP++Q L+GR
Sbjct: 188 NMVWVHKEDDVCIETEEGLTHCKLIAVHAGLETKNNVEEQLKLLRDKDTSIPRIQPLTGR 247
Query: 462 KNVWDIPEELRASPTIIVSGHHAKLHIDGYRLIIDEGGGFKDKPVAAVVLPSKKIIRDTD 283
K VW IP+EL TI+VSGHH KLHIDG RLIIDEGGG+ D P+AA+VLPSKKIIRDTD
Sbjct: 248 KTVWGIPQELDDKKTIVVSGHHGKLHIDGLRLIIDEGGGYTDTPLAAIVLPSKKIIRDTD 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,138,173
Number of Sequences: 1393205
Number of extensions: 10961701
Number of successful extensions: 21140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21131
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
