Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004687A_C01 KMC004687A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563868.1| Expressed protein; protein id: At1g10380.1, sup... 107 5e-23
pir||G86237 protein F14N23.27 [imported] - Arabidopsis thaliana ... 102 2e-21
ref|NP_199840.1| unknown protein; protein id: At5g50290.1 [Arabi... 43 0.002
dbj|BAB84596.1| receptor serine/threonine kinase like protein [O... 42 0.004
ref|NP_188361.1| unknown protein; protein id: At3g17350.1 [Arabi... 41 0.006
>ref|NP_563868.1| Expressed protein; protein id: At1g10380.1, supported by cDNA:
156978., supported by cDNA: gi_16323146 [Arabidopsis
thaliana] gi|16323147|gb|AAL15308.1| At1g10380/F14N23_32
[Arabidopsis thaliana] gi|21436013|gb|AAM51584.1|
At1g10380/F14N23_32 [Arabidopsis thaliana]
gi|21553681|gb|AAM62774.1| unknown [Arabidopsis
thaliana]
Length = 305
Score = 107 bits (268), Expect = 5e-23
Identities = 45/87 (51%), Positives = 62/87 (70%), Gaps = 3/87 (3%)
Frame = -1
Query: 473 SDPEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYSGPYNSFICNCPNGFNTTTDCF 294
S PE WNYGIALKYKF+V ++YP C +CERSNG CG++ +SF+CNCP G NTT+DCF
Sbjct: 212 SHPENWNYGIALKYKFNVFDEYPGVCGSCERSNGACGFNTQSSSFVCNCPGGINTTSDCF 271
Query: 293 FISDNNGFR---NGVAWLIYPVAWSLV 222
F+ ++ W++YP++W +V
Sbjct: 272 FLYNSASILVPWFSREWVMYPLSWFVV 298
>pir||G86237 protein F14N23.27 [imported] - Arabidopsis thaliana
gi|4914341|gb|AAD32889.1|AC005489_27 F14N23.27
[Arabidopsis thaliana]
Length = 333
Score = 102 bits (255), Expect = 2e-21
Identities = 47/89 (52%), Positives = 60/89 (66%), Gaps = 1/89 (1%)
Frame = -1
Query: 473 SDPEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYSGPYNSFICNCPNGFNTTTDCF 294
S PE WNYGIALKYKF+V ++YP C +CERSNG CG++ +SF+CNCP G NTT+DCF
Sbjct: 212 SHPENWNYGIALKYKFNVFDEYPGVCGSCERSNGACGFNTQSSSFVCNCPGGINTTSDCF 271
Query: 293 FISDNNGFRNGVAWL-IYPVAWSLVSFFL 210
F+ ++ V W IY V FF+
Sbjct: 272 FLYNSASIL--VPWFSIYRFVLQRVVFFI 298
>ref|NP_199840.1| unknown protein; protein id: At5g50290.1 [Arabidopsis thaliana]
gi|9759031|dbj|BAB09400.1| gene_id:K6A12.15~unknown
protein [Arabidopsis thaliana]
Length = 335
Score = 42.7 bits (99), Expect = 0.002
Identities = 24/73 (32%), Positives = 36/73 (48%), Gaps = 3/73 (4%)
Frame = -1
Query: 467 PEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGY---SGPYNSFICNCPNGFNTTTDC 297
P W YGI +KY+ ++ + C AC ++G CGY G +C C N N+TT+C
Sbjct: 211 PSDWAYGIRVKYELQGSDAF---CRACVATSGTCGYEPADGGGLRHVCMCDN-HNSTTNC 266
Query: 296 FFISDNNGFRNGV 258
+ G + V
Sbjct: 267 DSVISPTGASSSV 279
>dbj|BAB84596.1| receptor serine/threonine kinase like protein [Oryza sativa
(japonica cultivar-group)]
Length = 514
Score = 41.6 bits (96), Expect = 0.004
Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Frame = -1
Query: 473 SDPEKWN---YGIALKYKFSVT---NDYPPSCAACERSNGFCGYSGPYNSFICNCPNG 318
S+ WN Y L+ F ++ + PP+C+ CE S G CGYS C CPNG
Sbjct: 211 SNGNAWNNSGYAQVLRQGFQLSVNESRRPPNCSQCEESQGRCGYSQAGEFIGCLCPNG 268
>ref|NP_188361.1| unknown protein; protein id: At3g17350.1 [Arabidopsis thaliana]
gi|11994552|dbj|BAB02739.1|
gb|AAD32889.1~gene_id:MGD8.19~similar to unknown protein
[Arabidopsis thaliana]
Length = 278
Score = 41.2 bits (95), Expect = 0.006
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -1
Query: 467 PEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYSGPYNSFICNCPNGFNTTT 303
P W+YGI L Y SVT C C +S G CG+ F+C C N T
Sbjct: 216 PLDWSYGIELSY--SVTEI---GCDRCRKSGGTCGFDAETEIFLCQCSGSNNNPT 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,831,450
Number of Sequences: 1393205
Number of extensions: 7979900
Number of successful extensions: 19851
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 18653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19839
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
