Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004680A_C01 KMC004680A_c01
(380 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P05478|HS16_SOYBN 18.5 KD CLASS I HEAT SHOCK PROTEIN (HSP 18.... 67 5e-11
sp|P27880|HS12_MEDSA 18.2 KD CLASS I HEAT SHOCK PROTEIN gi|99979... 67 7e-11
gb|AAN74634.1| heat shock protein [Pisum sativum] 66 9e-11
sp|P27397|HS12_DAUCA 18.0 KD CLASS I HEAT SHOCK PROTEIN (CLONE D... 66 1e-10
sp|P19243|HS11_PEA 18.1 KD CLASS I HEAT SHOCK PROTEIN (HSP 18.1)... 66 1e-10
>sp|P05478|HS16_SOYBN 18.5 KD CLASS I HEAT SHOCK PROTEIN (HSP 18.5) gi|81788|pir||S00646
heat shock protein 18.5-C - soybean
gi|18654|emb|CAA30154.1| hsp18.5-C protein (AA 1 - 161)
[Glycine max]
Length = 161
Score = 67.0 bits (162), Expect = 5e-11
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +1
Query: 157 MSILPNSLFGRRRS--EPHRSHIWDLFQDHGFGAARTSTPHMAFPSEPSPMVNSHIEWKE 330
MS++PN GRR + +P +WD F+D F +S F E S V++ ++WKE
Sbjct: 1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60
Query: 331 TPEAHVGKAHLPGLKR 378
TPEAHV KA +PGLK+
Sbjct: 61 TPEAHVFKADIPGLKK 76
>sp|P27880|HS12_MEDSA 18.2 KD CLASS I HEAT SHOCK PROTEIN gi|99979|pir||S16247 heat shock
protein 18.2 - alfalfa gi|19618|emb|CAA41547.1| heat
shock protein [Medicago sativa]
Length = 158
Score = 66.6 bits (161), Expect = 7e-11
Identities = 36/77 (46%), Positives = 49/77 (62%), Gaps = 3/77 (3%)
Frame = +1
Query: 157 MSILPNSLFGRRRS---EPHRSHIWDLFQDHGFGAARTSTPHMAFPSEPSPMVNSHIEWK 327
MS++P S FG RRS +P +WD F+D F + S +FP E S V++ ++WK
Sbjct: 1 MSLIP-SFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSA---SFPRENSAFVSTRVDWK 56
Query: 328 ETPEAHVGKAHLPGLKR 378
ETPEAHV KA LPG+K+
Sbjct: 57 ETPEAHVFKADLPGMKK 73
>gb|AAN74634.1| heat shock protein [Pisum sativum]
Length = 158
Score = 66.2 bits (160), Expect = 9e-11
Identities = 36/77 (46%), Positives = 49/77 (62%), Gaps = 3/77 (3%)
Frame = +1
Query: 157 MSILPNSLFGRRRS---EPHRSHIWDLFQDHGFGAARTSTPHMAFPSEPSPMVNSHIEWK 327
MS++P S FG RRS +P +WD +D F ++ S +FP E S V++ ++WK
Sbjct: 1 MSLIP-SFFGNRRSNVYDPFSLDVWDPLKDFPFPSSALSA---SFPRENSAFVSTRVDWK 56
Query: 328 ETPEAHVGKAHLPGLKR 378
ETPEAHV KA LPGLK+
Sbjct: 57 ETPEAHVFKADLPGLKK 73
>sp|P27397|HS12_DAUCA 18.0 KD CLASS I HEAT SHOCK PROTEIN (CLONE DCHSP17.9)
gi|71496|pir||CYPZ79 heat shock protein (clone
DChsp17.9) - carrot gi|18355|emb|CAA37848.1| heat shock
protein [Daucus carota]
Length = 159
Score = 65.9 bits (159), Expect = 1e-10
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +1
Query: 157 MSILPNSLFGRRRSE---PHRSHIWDLFQDHGFGAARTSTPHMAFPSEPSPMVNSHIEWK 327
MSI+P S FG RRS P IWD FQD+ +S F E + N+HI+WK
Sbjct: 1 MSIIP-SFFGSRRSNVLNPFSLDIWDPFQDYPL--ITSSGTSSEFGKETAAFANTHIDWK 57
Query: 328 ETPEAHVGKAHLPGLKR 378
ETP+AHV KA LPGLK+
Sbjct: 58 ETPQAHVFKADLPGLKK 74
>sp|P19243|HS11_PEA 18.1 KD CLASS I HEAT SHOCK PROTEIN (HSP 18.1)
gi|169103|gb|AAA33672.1| 18.1 kDa heat shock protein
(hsp18.1)
Length = 158
Score = 65.9 bits (159), Expect = 1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 157 MSILPNSLFGRRRS--EPHRSHIWDLFQDHGFGAARTSTPHMAFPSEPSPMVNSHIEWKE 330
MS++P+ GRR + +P +WD +D F S+P +FP E V++ ++WKE
Sbjct: 1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFS---NSSPSASFPRENPAFVSTRVDWKE 57
Query: 331 TPEAHVGKAHLPGLKR 378
TPEAHV KA LPGLK+
Sbjct: 58 TPEAHVFKADLPGLKK 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,465,971
Number of Sequences: 1393205
Number of extensions: 7776794
Number of successful extensions: 18859
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 18239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18845
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
