Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004679A_C01 KMC004679A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193740.1| hyuC-like protein; protein id: At4g20070.1 [Ara... 175 4e-43
pir||T04891 hyuC protein homolog F18F4.170 - Arabidopsis thalian... 143 2e-33
ref|NP_772787.1| bll6147 [Bradyrhizobium japonicum] gi|27354425|... 72 5e-12
gb|ZP_00022507.1| hypothetical protein [Ralstonia metallidurans] 69 7e-11
ref|NP_406721.1| putative amino acid hydrolase [Yersinia pestis]... 69 7e-11
>ref|NP_193740.1| hyuC-like protein; protein id: At4g20070.1 [Arabidopsis thaliana]
gi|25407573|pir||F85227 hyuC-like protein [imported] -
Arabidopsis thaliana gi|7228243|emb|CAA16615.2|
hyuC-like protein [Arabidopsis thaliana]
gi|7268802|emb|CAB79007.1| hyuC-like protein
[Arabidopsis thaliana]
Length = 525
Score = 175 bits (444), Expect = 4e-43
Identities = 86/116 (74%), Positives = 100/116 (86%)
Frame = -1
Query: 628 IYDLSNRIYQICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVP 449
++DLS R+YQICD+RS+ C IE KH+A AV+ D LS QLKSAA SALK+M G++Q+EVP
Sbjct: 408 LHDLSTRMYQICDKRSLLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVP 467
Query: 448 TLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPEEHVLDNDVWAAGLATLSFLEN 281
LMSGAGHDAMAM+HLTKVGMLFVRCRGGISHSP EHVLD+DV AAGLA L FLE+
Sbjct: 468 VLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLES 523
>pir||T04891 hyuC protein homolog F18F4.170 - Arabidopsis thaliana (fragment)
Length = 338
Score = 143 bits (361), Expect = 2e-33
Identities = 75/116 (64%), Positives = 88/116 (75%)
Frame = -1
Query: 628 IYDLSNRIYQICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVP 449
++DLS R+YQICD+RS+ C IE K +KS SALK+M G++Q+EVP
Sbjct: 238 LHDLSTRMYQICDKRSLLCSIERK---------------VKSV--SALKKMTGEVQDEVP 280
Query: 448 TLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPEEHVLDNDVWAAGLATLSFLEN 281
LMSGAGHDAMAM+HLTKVGMLFVRCRGGISHSP EHVLD+DV AAGLA L FLE+
Sbjct: 281 VLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLES 336
>ref|NP_772787.1| bll6147 [Bradyrhizobium japonicum] gi|27354425|dbj|BAC51412.1|
bll6147 [Bradyrhizobium japonicum USDA 110]
Length = 430
Score = 72.4 bits (176), Expect = 5e-12
Identities = 44/118 (37%), Positives = 61/118 (51%)
Frame = -1
Query: 628 IYDLSNRIYQICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVP 449
+ D+ +I I RR ++ ++ H C S L Q+ A + EG ++P
Sbjct: 312 VADVVRQIEAIAKRRQLALQLDVTHENRTAPCASWLKDQIAQAIAA-----EGVSVFDLP 366
Query: 448 TLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPEEHVLDNDVWAAGLATLSFLENLQ 275
SGAGHD MAM + VGM+FVRCRGG+SH P+EHV D A L +EN +
Sbjct: 367 ---SGAGHDGMAMIDIADVGMIFVRCRGGVSHHPDEHVELADADAGARVLLRVIENFR 421
>gb|ZP_00022507.1| hypothetical protein [Ralstonia metallidurans]
Length = 307
Score = 68.6 bits (166), Expect = 7e-11
Identities = 44/117 (37%), Positives = 60/117 (50%), Gaps = 1/117 (0%)
Frame = -1
Query: 628 IYDLSNRIYQICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVP 449
+ D+ I ++C RR+V I H A +V C L SQ ++A +G +P
Sbjct: 194 VNDVLAEIERVCARRNVRSQIRKTHEAASVPCAPWLQSQ-----WAAAVERQGVPVHHLP 248
Query: 448 TLMSGAGHDAMAMSHLTKVGMLFVRC-RGGISHSPEEHVLDNDVWAAGLATLSFLEN 281
SGAGHDAMA++ + V MLFVRC GGISH P E + D A F+E+
Sbjct: 249 ---SGAGHDAMAIAAIADVAMLFVRCGNGGISHHPTETMTSEDAQTAARVFADFVEH 302
>ref|NP_406721.1| putative amino acid hydrolase [Yersinia pestis]
gi|25290166|pir||AH0394 probable amino acid hydrolase
YPO3249 [imported] - Yersinia pestis (strain CO92)
gi|15981185|emb|CAC92484.1| putative amino acid
hydrolase [Yersinia pestis CO92]
Length = 430
Score = 68.6 bits (166), Expect = 7e-11
Identities = 38/96 (39%), Positives = 50/96 (51%)
Frame = -1
Query: 598 ICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVPTLMSGAGHDA 419
I RR ++ E + A CDS L + + +Q L SGAGHDA
Sbjct: 317 IATRRGITFAAEGFYRIKATACDSALQQCISQSI--------SQVQGRCLALPSGAGHDA 368
Query: 418 MAMSHLTKVGMLFVRCRGGISHSPEEHVLDNDVWAA 311
+AM+ VGMLFVRC+GG+SH P+E V +DV A
Sbjct: 369 IAMAECWPVGMLFVRCKGGVSHHPDESVTSSDVAVA 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,890,547
Number of Sequences: 1393205
Number of extensions: 10786716
Number of successful extensions: 21772
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 21179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21765
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
