Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004678A_C01 KMC004678A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189853.1| putative protein; protein id: At3g42670.1 [Arab... 72 8e-12
ref|NP_197542.1| putative protein; protein id: At5g20420.1 [Arab... 70 2e-11
gb|AAO59391.1| nonstructural protein [Dendrolimus punctatus cypo... 33 3.3
ref|NP_149153.1| unknown [Lymantria dispar cypovirus 1] gi|14795... 33 3.3
gb|EAA18599.1| hypothetical protein [Plasmodium yoelii yoelii] 33 4.3
>ref|NP_189853.1| putative protein; protein id: At3g42670.1 [Arabidopsis thaliana]
gi|11357995|pir||T47325 hypothetical protein T12K4.120 -
Arabidopsis thaliana gi|7523392|emb|CAB86450.1| putative
protein [Arabidopsis thaliana]
Length = 1256
Score = 71.6 bits (174), Expect = 8e-12
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Frame = -1
Query: 648 LEEDKYRKP--RERVGFKHDFQ*AFVEDPSKWXAQKIEDETLREMVGEDRSKSFHMIMKT 475
LEEDKYR+ +E V F FVEDPS+W A+KIED+ LRE+V ED+ KSFHMIMK
Sbjct: 1191 LEEDKYRRTTWKEWVS-SMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKN 1249
Query: 474 EKTTT 460
EK +T
Sbjct: 1250 EKAST 1254
>ref|NP_197542.1| putative protein; protein id: At5g20420.1 [Arabidopsis thaliana]
Length = 1261
Score = 70.5 bits (171), Expect = 2e-11
Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Frame = -1
Query: 648 LEEDKYRKP--RERVGFKHDFQ*AFVEDPSKWXAQKIEDETLREMVGEDRSKSFHMIMKT 475
LEEDKYR+ +E V F FV DPS W A+KIED+ LRE+VGED+ KSFHMIMK
Sbjct: 1197 LEEDKYRRTTWKEWVSCMI-FSEEFVADPSLWQAEKIEDDILREIVGEDKVKSFHMIMKN 1255
Query: 474 EKTTT 460
EK +T
Sbjct: 1256 EKAST 1260
>gb|AAO59391.1| nonstructural protein [Dendrolimus punctatus cypovirus]
Length = 390
Score = 33.1 bits (74), Expect = 3.3
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -3
Query: 403 LKKGPAEAKHCRKSITKGTKPAISMFGNPSTID-------SKVKINYGEKLL*VVFVSSF 245
L P E + RKS+T+ TKP+ S +P + SK E+ L VFVS F
Sbjct: 232 LTNAPKEQRTSRKSVTRTTKPSFSSLSSPDIVSASVITPVSKAAARPVEEFLSSVFVSLF 291
>ref|NP_149153.1| unknown [Lymantria dispar cypovirus 1] gi|14795001|gb|AAK73527.1|
unknown [Lymantria dispar cypovirus 1]
Length = 390
Score = 33.1 bits (74), Expect = 3.3
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -3
Query: 403 LKKGPAEAKHCRKSITKGTKPAISMFGNPSTID-------SKVKINYGEKLL*VVFVSSF 245
L P E + RKS+T+ TKP+ S +P + SK E+ L VFVS F
Sbjct: 232 LTNAPKEQRTSRKSVTRTTKPSFSSLSSPDIVSASVITPVSKAAARPVEEFLSSVFVSLF 291
>gb|EAA18599.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 430
Score = 32.7 bits (73), Expect = 4.3
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = -1
Query: 642 EDKYRKPRERVGFKHDFQ*AFVEDPSKWXAQKIEDETLREMVGEDRSKSFHMIMKTEKTT 463
E+ +K RE ++ + F+++ +KW +KI+DE ++ E+ K H + T
Sbjct: 313 ENLKKKKRENENILNETENHFLQEKNKWD-EKIQDEKKNTIIVEENVKQIHESIDDITTK 371
Query: 462 TNK*KSQIKRLL 427
TN+ +I ++
Sbjct: 372 TNQEIQEINNIV 383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,244,477
Number of Sequences: 1393205
Number of extensions: 10165107
Number of successful extensions: 17945
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17935
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
