Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004676A_C01 KMC004676A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana g... 33 3.0
ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, ... 33 3.0
ref|ZP_00128841.1| hypothetical protein [Desulfovibrio desulfuri... 32 6.8
>pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana
gi|9369372|gb|AAF87121.1|AC006434_17 F10A5.28
[Arabidopsis thaliana]
Length = 355
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/61 (32%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Frame = -2
Query: 324 WLI*NFR*MVLKFHCIKLSLVTYHAPCSLGIHLFGLVSAYCRSQSN*FVYH--WFLTSLA 151
WL+ F+ VLK + +LS+ +Y C GI F +++A+C S +V+H W L ++
Sbjct: 181 WLV--FQAPVLKSYPARLSVTSY--TCFFGIIQFLIIAAFCERDSQAWVFHSGWELFTIL 236
Query: 150 F 148
+
Sbjct: 237 Y 237
>ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, supported by cDNA:
gi_15028078, supported by cDNA: gi_20259306 [Arabidopsis
thaliana] gi|15028079|gb|AAK76570.1| putative nodulin
protein [Arabidopsis thaliana]
gi|20259307|gb|AAM14389.1| putative nodulin protein
[Arabidopsis thaliana] gi|23397059|gb|AAN31815.1|
putative nodulin [Arabidopsis thaliana]
Length = 389
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/61 (32%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Frame = -2
Query: 324 WLI*NFR*MVLKFHCIKLSLVTYHAPCSLGIHLFGLVSAYCRSQSN*FVYH--WFLTSLA 151
WL+ F+ VLK + +LS+ +Y C GI F +++A+C S +V+H W L ++
Sbjct: 215 WLV--FQAPVLKSYPARLSVTSY--TCFFGIIQFLIIAAFCERDSQAWVFHSGWELFTIL 270
Query: 150 F 148
+
Sbjct: 271 Y 271
>ref|ZP_00128841.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 513
Score = 31.6 bits (70), Expect = 6.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 428 ILLLVGYGVVASSIYYLYDMA*LIVYESETEGRTFFPPIPY 550
++ V YG ++IYY+ + L+VY ++G +F +P+
Sbjct: 178 VMFFVSYGAKVTAIYYVPAICILLVYHVRSKGNSFRDAVPH 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,409,276
Number of Sequences: 1393205
Number of extensions: 8544130
Number of successful extensions: 19410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19405
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
