Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004675A_C06 KMC004675A_c06
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12);... 85 9e-16
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 85 9e-16
gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populu... 84 2e-15
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 81 1e-14
gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana] 69 4e-11
>ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12); protein id:
At5g60490.1, supported by cDNA: 15239., supported by
cDNA: gi_15294287 [Arabidopsis thaliana]
gi|9757751|dbj|BAB08232.1| contains similarity to
surface protein~gene_id:MUF9.12 [Arabidopsis thaliana]
Length = 249
Score = 84.7 bits (208), Expect = 9e-16
Identities = 46/94 (48%), Positives = 60/94 (62%), Gaps = 1/94 (1%)
Frame = -1
Query: 616 TGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEG 437
+G+ N TV G+VYSD QLAVYQVDKVLLP+ F +PPAPAPAP +K+ KKK DD++
Sbjct: 155 SGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKK--DDSDS 212
Query: 436 PAGDDSAAVSVKQRLVWGPL-AVAMVVVAAFSSW 338
+ D A S R V AV+ V++ +W
Sbjct: 213 SSDDSPADASFALRNVGSVCDAVSFCVMSVMLAW 246
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 84.7 bits (208), Expect = 9e-16
Identities = 46/94 (48%), Positives = 60/94 (62%), Gaps = 1/94 (1%)
Frame = -1
Query: 616 TGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEG 437
+G+ N TV G+VYSD QLAVYQVDKVLLP+ F +PPAPAPAP +K+ KKK DD++
Sbjct: 154 SGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKK--DDSDS 211
Query: 436 PAGDDSAAVSVKQRLVWGPL-AVAMVVVAAFSSW 338
+ D A S R V AV+ V++ +W
Sbjct: 212 SSDDSPADASFALRNVGSVCDAVSFCVMSVMLAW 245
>gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populus x canescens]
Length = 240
Score = 83.6 bits (205), Expect = 2e-15
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = -1
Query: 616 TGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEG 437
TG+ N +V G++Y+DNQLAV+QVDKVLLP D F KPP PAPAPEK K + K+A E
Sbjct: 152 TGLTNTSVSGTIYTDNQLAVHQVDKVLLPLDIFTPKPPTPAPAPEKPK-KRSKAAASPES 210
Query: 436 PAGDDSAAVS 407
PA D S AVS
Sbjct: 211 PA-DTSGAVS 219
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 81.3 bits (199), Expect = 1e-14
Identities = 40/69 (57%), Positives = 50/69 (71%)
Frame = -1
Query: 616 TGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEG 437
+G+ N TV G+VYSD QLAVYQVDKVLLP+ F +PPAPAPAP +K+ KKK D+
Sbjct: 155 SGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKKDDSDS-- 212
Query: 436 PAGDDSAAV 410
+ DDS A+
Sbjct: 213 -SSDDSPAM 220
>gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 246
Score = 69.3 bits (168), Expect = 4e-11
Identities = 44/92 (47%), Positives = 55/92 (58%)
Frame = -1
Query: 616 TGIVNVTVGGSVYSDNQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEG 437
TG+V+ TV SVYSD QLAVYQVD+VLLP F APAPAPEK + K SA + G
Sbjct: 153 TGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF-GSSVAPAPAPEKGGSVSKGSA--SGG 209
Query: 436 PAGDDSAAVSVKQRLVWGPLAVAMVVVAAFSS 341
G DS S +R +G + + VAA ++
Sbjct: 210 DDGGDSTDSSDAERTAFG-FGIRITTVAAIAA 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,970,848
Number of Sequences: 1393205
Number of extensions: 12850783
Number of successful extensions: 109813
Number of sequences better than 10.0: 337
Number of HSP's better than 10.0 without gapping: 62146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96517
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
