Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004672A_C01 KMC004672A_c01
(392 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, ... 67 5e-11
pir||T01623 hypothetical protein At2g18950 [imported] - Arabidop... 54 4e-07
ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi... 43 0.001
ref|ZP_00070982.1| hypothetical protein [Trichodesmium erythraeu... 41 0.004
ref|ZP_00075394.1| hypothetical protein [Trichodesmium erythraeu... 41 0.004
>ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, supported by cDNA:
gi_17104827, supported by cDNA: gi_17380873, supported
by cDNA: gi_20384918, supported by cDNA: gi_21281071
[Arabidopsis thaliana]
gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol
polyprenyltransferase [Arabidopsis thaliana]
gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis
thaliana] gi|20384919|gb|AAM10489.1| homogentisate
phytylprenyltransferase [Arabidopsis thaliana]
gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis
thaliana]
Length = 393
Score = 67.0 bits (162), Expect = 5e-11
Identities = 29/54 (53%), Positives = 40/54 (73%)
Frame = -3
Query: 390 WSKVITGLGYAVLASILWYNAQSVDLGSKDSVQSFYIFIWKLLSAHYFLVPFVR 229
WSKVI+ +G+ +LA+ LW A+SVDL SK + S Y+FIWKL A Y L+PF++
Sbjct: 340 WSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393
>pir||T01623 hypothetical protein At2g18950 [imported] - Arabidopsis thaliana
gi|3004556|gb|AAC09029.1| hypothetical protein
[Arabidopsis thaliana]
Length = 210
Score = 54.3 bits (129), Expect = 4e-07
Identities = 23/42 (54%), Positives = 32/42 (75%)
Frame = -3
Query: 390 WSKVITGLGYAVLASILWYNAQSVDLGSKDSVQSFYIFIWKL 265
WSKVI+ +G+ +LA+ LW A+SVDL SK + S Y+FIWK+
Sbjct: 164 WSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKV 205
>ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470486|pir||S74813
hypothetical protein slr1736 - Synechocystis sp. (strain
PCC 6803) gi|1652856|dbj|BAA17774.1|
ORF_ID:slr1736~unknown protein [Synechocystis sp. PCC
6803]
Length = 308
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -3
Query: 369 LGYAVLASILWYNAQSVDLGSKDSVQSFYIFIWKLLSAHYFLVP 238
+ + L ++LW+ ++ V L SK + SFY FIWKL Y L P
Sbjct: 252 VSHLCLLALLWWRSRDVHLESKTEIASFYQFIWKLFFLEYLLYP 295
>ref|ZP_00070982.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 349
Score = 40.8 bits (94), Expect = 0.004
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 369 LGYAVLASILWYNAQSVDLGSKDSVQSFYIFIWKLLSAHYFLVP 238
+ + + I+W+ +Q VDL K ++ FY FIWKL Y + P
Sbjct: 301 ISHLLALGIMWWFSQRVDLHDKKAIADFYQFIWKLFFLEYLIFP 344
>ref|ZP_00075394.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 77
Score = 40.8 bits (94), Expect = 0.004
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 369 LGYAVLASILWYNAQSVDLGSKDSVQSFYIFIWKLLSAHYFLVP 238
+ + + I+W+ +Q VDL K ++ FY FIWKL Y + P
Sbjct: 29 ISHLLALGIMWWFSQRVDLHDKKAIADFYQFIWKLFFLEYLIFP 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,605,272
Number of Sequences: 1393205
Number of extensions: 6622978
Number of successful extensions: 13648
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13648
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
