Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004670A_C01 KMC004670A_c01
(893 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65988.1| B1123E10.13 [Oryza sativa (japonica cultivar-gro... 44 0.003
dbj|BAC65981.1| putative alpha glucosidase [Oryza sativa (japoni... 40 0.048
dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis thal... 37 0.31
ref|NP_566736.1| glycosyl hydrolase family 31; protein id: At3g2... 37 0.31
ref|XP_237905.1| hypothetical protein XP_237905 [Rattus norvegicus] 33 7.6
>dbj|BAC65988.1| B1123E10.13 [Oryza sativa (japonica cultivar-group)]
Length = 869
Score = 43.9 bits (102), Expect = 0.003
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +2
Query: 47 LVLTRNTDSWSYDPGAASLSKSHP*VLAVL 136
LV+T NTD+W Y PG SL +SHP VLAVL
Sbjct: 24 LVITWNTDAWDYGPGTTSLYQSHPWVLAVL 53
>dbj|BAC65981.1| putative alpha glucosidase [Oryza sativa (japonica cultivar-group)]
Length = 821
Score = 40.0 bits (92), Expect = 0.048
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +2
Query: 50 VLTRNTDSWSYDPGAASLSKSHP*VLAVL 136
V T NTD+W + PG SL +SHP VLAVL
Sbjct: 88 VFTWNTDAWGFGPGTTSLYQSHPWVLAVL 116
>dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis thaliana]
Length = 959
Score = 37.4 bits (85), Expect = 0.31
Identities = 19/45 (42%), Positives = 23/45 (50%)
Frame = +2
Query: 50 VLTRNTDSWSYDPGAASLSKSHP*VLAVLIVASLYPLVIFTLALC 184
V T NTD+W Y G SL +SHP VL VL ++ T C
Sbjct: 93 VFTWNTDAWGYGSGTTSLYQSHPWVLVVLPTGETLGVLADTTRKC 137
>ref|NP_566736.1| glycosyl hydrolase family 31; protein id: At3g23640.1, supported by
cDNA: gi_16648902 [Arabidopsis thaliana]
gi|16648903|gb|AAL24303.1| alpha glucosidase-like
protein [Arabidopsis thaliana]
gi|27311799|gb|AAO00865.1| Unknown protein [Arabidopsis
thaliana]
Length = 991
Score = 37.4 bits (85), Expect = 0.31
Identities = 19/45 (42%), Positives = 23/45 (50%)
Frame = +2
Query: 50 VLTRNTDSWSYDPGAASLSKSHP*VLAVLIVASLYPLVIFTLALC 184
V T NTD+W Y G SL +SHP VL VL ++ T C
Sbjct: 105 VFTWNTDAWGYGSGTTSLYQSHPWVLVVLPTGETLGVLADTTRKC 149
>ref|XP_237905.1| hypothetical protein XP_237905 [Rattus norvegicus]
Length = 118
Score = 32.7 bits (73), Expect = 7.6
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = -2
Query: 676 SGSYSPFATSSYSSYIRTTDPLGNAPIIGLGNIYTIVPISLRILQH 539
S S PFAT+ S + TT P A ++G+ + + P+S++ H
Sbjct: 63 STSCMPFATTRVVSTMATTQPCAGARLVGMSTMTPVSPLSVKTRWH 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 694,731,691
Number of Sequences: 1393205
Number of extensions: 14297935
Number of successful extensions: 26945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26937
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48775691475
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
