Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004669A_C01 KMC004669A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567502.1| expressed protein; protein id: At4g16510.1, sup... 127 1e-28
gb|EAA40916.1| GLP_186_13585_14268 [Giardia lamblia ATCC 50803] 47 3e-04
gb|ZP_00057256.1| hypothetical protein [Thermobifida fusca] 35 0.79
ref|NP_055728.1| KIAA0863 protein [Homo sapiens] gi|4240215|dbj|... 35 1.0
dbj|BAB14180.1| unnamed protein product [Homo sapiens] 35 1.0
>ref|NP_567502.1| expressed protein; protein id: At4g16510.1, supported by cDNA:
gi_15451033, supported by cDNA: gi_18377535 [Arabidopsis
thaliana] gi|15451034|gb|AAK96788.1| Unknown protein
[Arabidopsis thaliana] gi|18377536|gb|AAL66934.1|
unknown protein [Arabidopsis thaliana]
Length = 232
Score = 127 bits (319), Expect = 1e-28
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = -3
Query: 495 VRLAPEETSTELTGFGHNAVTCVGMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRT 316
+RLAPEETS +LTGF HN VTC+GMKT+IPVILDEAI KL PDFFWLGGGE+DLKLG+RT
Sbjct: 158 LRLAPEETSIKLTGFEHNGVTCIGMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRT 217
Query: 315 SQLIRFINPFIVNCS 271
S+ + F+ PFIV CS
Sbjct: 218 SEFLEFVKPFIVPCS 232
>gb|EAA40916.1| GLP_186_13585_14268 [Giardia lamblia ATCC 50803]
Length = 227
Score = 46.6 bits (109), Expect = 3e-04
Identities = 25/84 (29%), Positives = 45/84 (52%)
Frame = -3
Query: 522 KALKICDVRVRLAPEETSTELTGFGHNAVTCVGMKTDIPVILDEAIVKLTPDFFWLGGGE 343
K+L D R E+ + LTG HN + +G +IP++LD I++ T D W+GG
Sbjct: 142 KSLTKNDYTWRFCEEDEAVALTGAPHNGMGPIGTSMNIPLVLDANILQ-TVDNMWVGGMH 200
Query: 342 VDLKLGIRTSQLIRFINPFIVNCS 271
+KL + ++ + P +++C+
Sbjct: 201 PLVKLRVCCAEFKNLLMPLVLDCT 224
>gb|ZP_00057256.1| hypothetical protein [Thermobifida fusca]
Length = 277
Score = 35.0 bits (79), Expect = 0.79
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 498 RVRLAPEETSTELTGFGHNAVTCVGMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIR 319
+ AP+E + + TG + +T VG+ + P+++D A+V EV + G+R
Sbjct: 200 KASFAPQEEAVQQTGMEYGGITPVGLPPEWPILIDSAVV---------AQPEVVVGSGLR 250
Query: 318 TSQLI 304
S+LI
Sbjct: 251 RSKLI 255
>ref|NP_055728.1| KIAA0863 protein [Homo sapiens] gi|4240215|dbj|BAA74886.1| KIAA0863
protein [Homo sapiens]
Length = 1131
Score = 34.7 bits (78), Expect = 1.0
Identities = 18/43 (41%), Positives = 28/43 (64%), Gaps = 3/43 (6%)
Frame = -3
Query: 558 HCCYVETGSGSRKALKICDVRVRLAPEETSTEL---TGFGHNA 439
HCC V TG+ + A+ + VR R AP+++S++L GF HN+
Sbjct: 917 HCCGVYTGNMTLAAIAVHLVRCRSAPKDSSSDLQAQPGFIHNS 959
>dbj|BAB14180.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 34.7 bits (78), Expect = 1.0
Identities = 18/43 (41%), Positives = 28/43 (64%), Gaps = 3/43 (6%)
Frame = -3
Query: 558 HCCYVETGSGSRKALKICDVRVRLAPEETSTEL---TGFGHNA 439
HCC V TG+ + A+ + VR R AP+++S++L GF HN+
Sbjct: 437 HCCGVYTGNMTLAAIAVHLVRCRSAPKDSSSDLQAQPGFIHNS 479
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,284,148
Number of Sequences: 1393205
Number of extensions: 9472565
Number of successful extensions: 21425
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21413
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
