Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004668A_C01 KMC004668A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564867.1| expressed protein; protein id: At1g66180.1, sup... 137 1e-31
gb|AAM67226.1| unknown [Arabidopsis thaliana] 136 2e-31
ref|NP_568551.1| putative protein; protein id: At5g37540.1, supp... 134 5e-31
pir||T01000 hypothetical protein At2g39710 [imported] - Arabidop... 61 1e-08
dbj|BAC42973.1| unknown protein [Arabidopsis thaliana] 61 1e-08
>ref|NP_564867.1| expressed protein; protein id: At1g66180.1, supported by cDNA:
99625., supported by cDNA: gi_14334807, supported by
cDNA: gi_15293194 [Arabidopsis thaliana]
gi|25404595|pir||F96686 unknown protein F15E12.7
[imported] - Arabidopsis thaliana
gi|12322615|gb|AAG51309.1|AC026480_16 unknown protein
[Arabidopsis thaliana] gi|14334808|gb|AAK59582.1|
unknown protein [Arabidopsis thaliana]
gi|15293195|gb|AAK93708.1| unknown protein [Arabidopsis
thaliana]
Length = 430
Score = 137 bits (344), Expect = 1e-31
Identities = 65/92 (70%), Positives = 77/92 (83%)
Frame = -3
Query: 534 ADMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGGIHCIGIGNSDKLGAPS 355
ADMCF+ A+ + RLIG++VF F +GVEI+VPKERVL +VGGGIHC+GIG S LGA S
Sbjct: 339 ADMCFDGNVAM-IPRLIGDLVFVFTRGVEILVPKERVLVNVGGGIHCVGIGRSSMLGAAS 397
Query: 354 NIIGNFHQQNLWVEFDLANRRVGFGRADCSRL 259
NIIGN HQQNLWVEFD+ NRRVGF +ADCSR+
Sbjct: 398 NIIGNVHQQNLWVEFDVTNRRVGFAKADCSRV 429
>gb|AAM67226.1| unknown [Arabidopsis thaliana]
Length = 430
Score = 136 bits (342), Expect = 2e-31
Identities = 65/92 (70%), Positives = 76/92 (81%)
Frame = -3
Query: 534 ADMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGGIHCIGIGNSDKLGAPS 355
ADMCF+ A+ + RLIG++VF F +GVEI VPKERVL +VGGGIHC+GIG S LGA S
Sbjct: 339 ADMCFDGNVAM-IPRLIGDLVFVFTRGVEIFVPKERVLVNVGGGIHCVGIGRSSMLGAAS 397
Query: 354 NIIGNFHQQNLWVEFDLANRRVGFGRADCSRL 259
NIIGN HQQNLWVEFD+ NRRVGF +ADCSR+
Sbjct: 398 NIIGNVHQQNLWVEFDVTNRRVGFAKADCSRV 429
>ref|NP_568551.1| putative protein; protein id: At5g37540.1, supported by cDNA:
gi_15809849, supported by cDNA: gi_20260181 [Arabidopsis
thaliana] gi|10177438|dbj|BAB10671.1| contains
similarity to nucleoid DNA-binding
protein~gene_id:MPA22.8 [Arabidopsis thaliana]
gi|15809850|gb|AAL06853.1| AT5g37540/mpa22_p_70
[Arabidopsis thaliana] gi|20260182|gb|AAM12989.1|
unknown protein [Arabidopsis thaliana]
gi|23197748|gb|AAN15401.1| unknown protein [Arabidopsis
thaliana]
Length = 442
Score = 134 bits (338), Expect = 5e-31
Identities = 60/92 (65%), Positives = 76/92 (82%)
Frame = -3
Query: 534 ADMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGGIHCIGIGNSDKLGAPS 355
ADMCF+ ++++GRLIG++VFEF +GVEI+V K+ +L +VGGGIHC+GIG S LGA S
Sbjct: 350 ADMCFDGNHSMEIGRLIGDLVFEFGRGVEILVEKQSLLVNVGGGIHCVGIGRSSMLGAAS 409
Query: 354 NIIGNFHQQNLWVEFDLANRRVGFGRADCSRL 259
NIIGN HQQNLWVEFD+ NRRVGF +A+C L
Sbjct: 410 NIIGNVHQQNLWVEFDVTNRRVGFSKAECRLL 441
>pir||T01000 hypothetical protein At2g39710 [imported] - Arabidopsis thaliana
Length = 441
Score = 60.8 bits (146), Expect = 1e-08
Identities = 35/96 (36%), Positives = 50/96 (51%), Gaps = 8/96 (8%)
Frame = -3
Query: 531 DMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGG-------IHCIGIGNSD 373
D+C+ + MV +G E+ V +++L V G ++C GNSD
Sbjct: 335 DLCYKVGSTTRPNFSGLPMVSLMFRGAEMSVSGQKLLYRVNGAGSEGKEEVYCFTFGNSD 394
Query: 372 KLGAPSNIIGNFHQQNLWVEFDLANRRVGF-GRADC 268
LG + +IG+ HQQN+W+EFDLA RVGF G C
Sbjct: 395 LLGIEAFVIGHHHQQNVWMEFDLAKSRVGFAGNVRC 430
>dbj|BAC42973.1| unknown protein [Arabidopsis thaliana]
Length = 442
Score = 60.8 bits (146), Expect = 1e-08
Identities = 35/96 (36%), Positives = 50/96 (51%), Gaps = 8/96 (8%)
Frame = -3
Query: 531 DMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGG-------IHCIGIGNSD 373
D+C+ + MV +G E+ V +++L V G ++C GNSD
Sbjct: 336 DLCYKVGSTTRPNFSGLPMVSLMFRGAEMSVSGQKLLYRVNGAGSEGKEEVYCFTFGNSD 395
Query: 372 KLGAPSNIIGNFHQQNLWVEFDLANRRVGF-GRADC 268
LG + +IG+ HQQN+W+EFDLA RVGF G C
Sbjct: 396 LLGIEAFVIGHHHQQNVWMEFDLAKSRVGFAGNVRC 431
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,082,406
Number of Sequences: 1393205
Number of extensions: 11210106
Number of successful extensions: 45419
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 38769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44676
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
