Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004663A_C01 KMC004663A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61... 317 8e-86
ref|NP_194081.1| polygalacturonase, putative; protein id: At4g23... 314 5e-85
dbj|BAA90634.1| ESTs AU029388(E30287),D49277(S16474) correspond ... 308 4e-83
ref|NP_190464.1| polygalacturonase, putative; protein id: At3g48... 292 2e-78
ref|NP_179968.1| polygalacturonase, putative; protein id: At2g23... 276 9e-74
>ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61490.1 [Arabidopsis
thaliana] gi|11357717|pir||T47941 hypothetical protein
F2A19.90 - Arabidopsis thaliana
gi|6850840|emb|CAB71079.1| putative protein [Arabidopsis
thaliana]
Length = 476
Score = 317 bits (811), Expect = 8e-86
Identities = 146/181 (80%), Positives = 167/181 (91%)
Frame = +3
Query: 9 SSLICGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTL 188
+SLI GT+L+DVIITG+NGT+DGQG WW+KFH +L+YTRPYLIE+M+SD +QISNLT
Sbjct: 140 ASLIFGTNLSDVIITGNNGTIDGQGSFWWQKFHGGKLKYTRPYLIELMFSDTIQISNLTF 199
Query: 189 VNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 368
++SPSWNIHPVY SN+IV+G+TI+APV SPNTDGINPDSCTNTRIEDCYI+SGDDC+AVK
Sbjct: 200 LDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVK 259
Query: 369 SGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVR 548
SGWDEYGIS+GMPTKHLVIRRLTCISP SA IALGSEMSGGIEDVRAEDI A +ESGVR
Sbjct: 260 SGWDEYGISFGMPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVR 319
Query: 549 I 551
I
Sbjct: 320 I 320
>ref|NP_194081.1| polygalacturonase, putative; protein id: At4g23500.1 [Arabidopsis
thaliana] gi|7485556|pir||T05388 hypothetical protein
F16G20.200 - Arabidopsis thaliana
gi|3451075|emb|CAA20471.1| putative protein [Arabidopsis
thaliana] gi|7269198|emb|CAB79305.1| putative protein
[Arabidopsis thaliana] gi|23296346|gb|AAN13048.1|
unknown protein [Arabidopsis thaliana]
Length = 495
Score = 314 bits (804), Expect = 5e-85
Identities = 145/180 (80%), Positives = 167/180 (92%)
Frame = +3
Query: 12 SLICGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTLV 191
SL+ G++LTDV+ITG+NGT+DGQG+ WW KF +L+YTRPYLIEIM+SD +QISNLT +
Sbjct: 164 SLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGELKYTRPYLIEIMHSDGIQISNLTFL 223
Query: 192 NSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 371
NSPSW+IHPVY SN+ +QG+TILAPVT PNTDGINPDSCTNTRIEDCYIVSGDDC+AVKS
Sbjct: 224 NSPSWHIHPVYSSNIYIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKS 283
Query: 372 GWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVRI 551
GWD+YGI+YGMPTK L+IRRLTCISP SAVIALGSEMSGGIEDVRAEDI+AINSESG+RI
Sbjct: 284 GWDQYGINYGMPTKQLLIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRI 343
>dbj|BAA90634.1| ESTs AU029388(E30287),D49277(S16474) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana DNA
chromosome 4, BAC clone F16G20, picA protein. (AL031326)
[Oryza sativa (japonica cultivar-group)]
Length = 477
Score = 308 bits (788), Expect = 4e-83
Identities = 140/181 (77%), Positives = 166/181 (91%)
Frame = +3
Query: 9 SSLICGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTL 188
+SLI G++LTDV+ITG NGT+DGQG +WW KFH+ +L+YTR YLIE+M+SD V ISN+TL
Sbjct: 147 ASLIGGSNLTDVVITGANGTIDGQGAMWWSKFHSNKLKYTRGYLIEVMHSDTVVISNVTL 206
Query: 189 VNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 368
VNSP+WNIHPVY SN++VQG+TILAP SPNTDGINPDSC++ RIEDCYIVSGDDCVA+K
Sbjct: 207 VNSPAWNIHPVYSSNIVVQGVTILAPTHSPNTDGINPDSCSHVRIEDCYIVSGDDCVAIK 266
Query: 369 SGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVR 548
SGWDEYGI+YGMP++H+V+RRLTC+SPTSAVIALGSEMSGGI DVRAEDI A+NSES VR
Sbjct: 267 SGWDEYGIAYGMPSQHIVVRRLTCVSPTSAVIALGSEMSGGISDVRAEDITAVNSESAVR 326
Query: 549 I 551
I
Sbjct: 327 I 327
>ref|NP_190464.1| polygalacturonase, putative; protein id: At3g48950.1 [Arabidopsis
thaliana] gi|11357281|pir||T46135
endo-polygalacturonase-like protein - Arabidopsis
thaliana gi|6522571|emb|CAB62015.1|
endo-polygalacturonase-like protein [Arabidopsis
thaliana]
Length = 469
Score = 292 bits (747), Expect = 2e-78
Identities = 132/181 (72%), Positives = 159/181 (86%)
Frame = +3
Query: 9 SSLICGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTL 188
+SLI GT+LTDV+ITG+NGT++GQG WW KF KQ + TRPYLIEI++S N+QISN+TL
Sbjct: 141 NSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKKQFKITRPYLIEILFSKNIQISNITL 200
Query: 189 VNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 368
++SPSWNIHPVYC++VIV+ +T+LAPVT PNTDGINPDSCTNT IEDCYIVSGDDC+AVK
Sbjct: 201 IDSPSWNIHPVYCNSVIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVK 260
Query: 369 SGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVR 548
SGWD+YGI +GMPT+ L IRRLTCISP SA +ALGSEMSGGI+DVR ED+ N+ES +R
Sbjct: 261 SGWDQYGIKFGMPTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIR 320
Query: 549 I 551
I
Sbjct: 321 I 321
>ref|NP_179968.1| polygalacturonase, putative; protein id: At2g23900.1 [Arabidopsis
thaliana] gi|25412169|pir||B84630 probable
polygalacturonase [imported] - Arabidopsis thaliana
gi|3738338|gb|AAC63679.1| putative polygalacturonase
[Arabidopsis thaliana]
Length = 466
Score = 276 bits (707), Expect = 9e-74
Identities = 127/182 (69%), Positives = 157/182 (85%), Gaps = 1/182 (0%)
Frame = +3
Query: 9 SSLICGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQ-YTRPYLIEIMYSDNVQISNLT 185
+SLI GT+LTDV+ITG+NGT++GQG WW K+ + + TRPY IEI++S NVQISN+T
Sbjct: 140 ASLISGTNLTDVVITGNNGTINGQGKYWWVKYRSGGFKGITRPYTIEIIFSQNVQISNIT 199
Query: 186 LVNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 365
+++SP+WNIHPVYC+NVIV+G+TILAP+ SPNTDGINPDSCTNT IEDCY+VSGDDC+AV
Sbjct: 200 IIDSPAWNIHPVYCNNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAV 259
Query: 366 KSGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGV 545
KSGWD++GI GMPT+ L IRRLTCISP SA IALGSEMSGGI+DVR EDI + ++S +
Sbjct: 260 KSGWDQFGIKVGMPTQQLSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAI 319
Query: 546 RI 551
RI
Sbjct: 320 RI 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,766,709
Number of Sequences: 1393205
Number of extensions: 11438092
Number of successful extensions: 33190
Number of sequences better than 10.0: 374
Number of HSP's better than 10.0 without gapping: 31092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32753
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
