Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004661A_C02 KMC004661A_c02
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63095.1| unknown [Arabidopsis thaliana] 132 4e-30
ref|NP_566712.1| expressed protein; protein id: At3g22600.1, sup... 132 4e-30
gb|AAN60349.1| unknown [Arabidopsis thaliana] 132 4e-30
dbj|BAC24860.1| OJ1656_E11.26 [Oryza sativa (japonica cultivar-g... 117 8e-26
ref|NP_566126.1| expressed protein; protein id: At2g48130.1, sup... 116 2e-25
>gb|AAM63095.1| unknown [Arabidopsis thaliana]
Length = 166
Score = 132 bits (331), Expect = 4e-30
Identities = 62/96 (64%), Positives = 73/96 (75%)
Frame = +2
Query: 179 LVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGSSSSPSPSCCSQLSSVVQSSPQCLC 358
L + M T +AQS CT+AL S+SPCLNYITG+S+SP+ CC+QLS VVQSSP CLC
Sbjct: 6 LTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLC 65
Query: 359 SLLNGGGSSLGITMNQTLALSLPGPCKVQTPPVSQC 466
+LNGGGS LGI +NQT AL LP C VQTPPVS+C
Sbjct: 66 QVLNGGGSQLGINVNQTQALGLPRACNVQTPPVSRC 101
>ref|NP_566712.1| expressed protein; protein id: At3g22600.1, supported by cDNA:
19287., supported by cDNA: gi_15010697, supported by
cDNA: gi_18958061 [Arabidopsis thaliana]
gi|11994292|dbj|BAB01475.1|
gb|AAD48513.1~gene_id:F16J14.16~similar to unknown
protein [Arabidopsis thaliana]
gi|15010698|gb|AAK74008.1| AT3g22600/F16J14_17
[Arabidopsis thaliana] gi|18958062|gb|AAL79604.1|
AT3g22600/F16J14_17 [Arabidopsis thaliana]
Length = 170
Score = 132 bits (331), Expect = 4e-30
Identities = 62/96 (64%), Positives = 73/96 (75%)
Frame = +2
Query: 179 LVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGSSSSPSPSCCSQLSSVVQSSPQCLC 358
L + M T +AQS CT+AL S+SPCLNYITG+S+SP+ CC+QLS VVQSSP CLC
Sbjct: 10 LTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLC 69
Query: 359 SLLNGGGSSLGITMNQTLALSLPGPCKVQTPPVSQC 466
+LNGGGS LGI +NQT AL LP C VQTPPVS+C
Sbjct: 70 QVLNGGGSQLGINVNQTQALGLPRACNVQTPPVSRC 105
>gb|AAN60349.1| unknown [Arabidopsis thaliana]
Length = 168
Score = 132 bits (331), Expect = 4e-30
Identities = 62/96 (64%), Positives = 73/96 (75%)
Frame = +2
Query: 179 LVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGSSSSPSPSCCSQLSSVVQSSPQCLC 358
L + M T +AQS CT+AL S+SPCLNYITG+S+SP+ CC+QLS VVQSSP CLC
Sbjct: 8 LTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLC 67
Query: 359 SLLNGGGSSLGITMNQTLALSLPGPCKVQTPPVSQC 466
+LNGGGS LGI +NQT AL LP C VQTPPVS+C
Sbjct: 68 QVLNGGGSQLGINVNQTQALGLPRACNVQTPPVSRC 103
>dbj|BAC24860.1| OJ1656_E11.26 [Oryza sativa (japonica cultivar-group)]
Length = 171
Score = 117 bits (294), Expect = 8e-26
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +2
Query: 182 VMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGSSSSPSPSCCSQLSSVVQSSPQCLCS 361
V+V+ + AAQSGCTS + SL+PCL+Y+ G++S P+ SCC+ LSSVV+S P+CLC+
Sbjct: 14 VVVVAGALVAGAAAQSGCTSEMVSLAPCLDYMQGNASRPTASCCAALSSVVKSRPECLCA 73
Query: 362 LLNGGGSSLGITMNQTLALSLPGPCKVQTPPVSQC 466
+L GG SSLG+T+N T AL LP C V+TPP S+C
Sbjct: 74 VLGGGASSLGVTVNTTRALELPAACGVKTPPPSEC 108
>ref|NP_566126.1| expressed protein; protein id: At2g48130.1, supported by cDNA:
32411., supported by cDNA: gi_17529319 [Arabidopsis
thaliana] gi|25409096|pir||G84923 hypothetical protein
At2g48130 [imported] - Arabidopsis thaliana
gi|17529320|gb|AAL38887.1| unknown protein [Arabidopsis
thaliana] gi|21436367|gb|AAM51353.1| unknown protein
[Arabidopsis thaliana]
Length = 183
Score = 116 bits (291), Expect = 2e-25
Identities = 53/107 (49%), Positives = 75/107 (69%), Gaps = 2/107 (1%)
Frame = +2
Query: 152 MTYRGFALCLVMVMVATMWTQNAAQ--SGCTSALTSLSPCLNYITGSSSSPSPSCCSQLS 325
M YR + +VA +W+ AQ S C S LT+LSPCL+YITG+S++PS CCS+L
Sbjct: 1 MGYRRSYAITFVALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLD 60
Query: 326 SVVQSSPQCLCSLLNGGGSSLGITMNQTLALSLPGPCKVQTPPVSQC 466
SV++SSPQC+CS +N ++G+ +N+T AL LP C +QTPP++QC
Sbjct: 61 SVIKSSPQCICSAVNSPIPNIGLNINRTQALQLPNACNIQTPPLTQC 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,445,443
Number of Sequences: 1393205
Number of extensions: 10011542
Number of successful extensions: 29046
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 27028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28729
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
