Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004659A_C01 KMC004659A_c01
(1008 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197590.1| putative protein; protein id: At5g20900.1, supp... 100 5e-20
dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~un... 67 3e-10
gb|AAM65383.1| unknown [Arabidopsis thaliana] 66 7e-10
ref|NP_564075.1| expressed protein; protein id: At1g19180.1, sup... 66 7e-10
ref|NP_189930.1| putative protein; protein id: At3g43440.1 [Arab... 66 1e-09
>ref|NP_197590.1| putative protein; protein id: At5g20900.1, supported by cDNA:
gi_13430543, supported by cDNA: gi_15293158 [Arabidopsis
thaliana] gi|13430544|gb|AAK25894.1|AF360184_1 unknown
protein [Arabidopsis thaliana]
gi|15293159|gb|AAK93690.1| unknown protein [Arabidopsis
thaliana]
Length = 187
Score = 100 bits (248), Expect = 5e-20
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Frame = -2
Query: 794 SKVTIFYNGSVHIYDGIPADKVHEIMLIAAAAAKSVETKKIGMQSPIISPVPSRPSSPHG 615
+++TIF+ GSV ++DG+P++KV EI+ IAA K++ETK SP+ SP +R S
Sbjct: 56 NQLTIFFGGSVTVFDGLPSEKVQEILRIAA---KAMETKNSTSISPVSSPALNRAPS-FS 111
Query: 614 TTNNIASTQELCFPAKKSSICR-LQEFPIARRHSLQSFLEKRRNRLGSKAPYSSSSTTKA 438
+T+N+AS FP + S CR + PIARRHSLQ FLEKRR+RL +K PY +S K
Sbjct: 112 STSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPTSDFKKT 171
Query: 437 AV 432
V
Sbjct: 172 DV 173
>dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 244
Score = 67.4 bits (163), Expect = 3e-10
Identities = 48/185 (25%), Positives = 79/185 (41%)
Frame = -2
Query: 911 EPEQQVSALESSPHGDSVDGVATNKSVAASGLNAVIPNTSKVTIFYNGSVHIYDGIPADK 732
E E++ +E P + +A+ P ++TIFY G V +++ PADK
Sbjct: 63 EAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADK 122
Query: 731 VHEIMLIAAAAAKSVETKKIGMQSPIISPVPSRPSSPHGTTNNIASTQELCFPAKKSSIC 552
+M +A+ K +P + V +P ++S A+K +
Sbjct: 123 AKGLMQLAS---KGSPVAPQNAAAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARA 179
Query: 551 RLQEFPIARRHSLQSFLEKRRNRLGSKAPYSSSSTTKAAVADNIENNFSADNAPDLVSSK 372
+ PIAR+ SL FLEKR++RL +K PY +S + V E+ P+ V
Sbjct: 180 NASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKP 239
Query: 371 RPRGR 357
RG+
Sbjct: 240 IERGQ 244
>gb|AAM65383.1| unknown [Arabidopsis thaliana]
Length = 253
Score = 66.2 bits (160), Expect = 7e-10
Identities = 54/164 (32%), Positives = 80/164 (47%), Gaps = 1/164 (0%)
Frame = -2
Query: 893 SALESSPHGDSVDGVATNKSVAASGLNAVIPNTSKVTIFYNGSVHIYDGIPADKVHEIML 714
S+ S P D + T +SV T+ +TIFY G V +++ A+K E++
Sbjct: 98 SSSSSLPKEDVLKMTQTTRSVKPES------QTAPLTIFYAGQVIVFNDFSAEKAKEVIN 151
Query: 713 IAA-AAAKSVETKKIGMQSPIISPVPSRPSSPHGTTNNIASTQELCFPAKKSSICRLQEF 537
+A+ A S+ + ++S I + + ++ P TT TQE +SS L E
Sbjct: 152 LASKGTANSLAKNQTDIRSNIAT-IANQVPHPRKTT-----TQEPI----QSSPTPLTEL 201
Query: 536 PIARRHSLQSFLEKRRNRLGSKAPYSSSSTTKAAVADNIENNFS 405
PIARR SL FLEKR++R+ SKAPY KA+ N S
Sbjct: 202 PIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMS 245
>ref|NP_564075.1| expressed protein; protein id: At1g19180.1, supported by cDNA:
38751., supported by cDNA: gi_12083249, supported by
cDNA: gi_14532539, supported by cDNA: gi_17473767,
supported by cDNA: gi_19548054, supported by cDNA:
gi_20148608 [Arabidopsis thaliana]
gi|25513501|pir||C86325 T29M8.5 protein - Arabidopsis
thaliana gi|8954056|gb|AAF82229.1|AC069143_5 Contains
similarity to an unknown protein T10D10.8 gi|6730756
from Arabidopsis thaliana BAC T10D10 gb|AC016529. ESTs
gb|T14209, gb|BE038503, gb|AA650871, gb|AA597384,
gb|H76606, gb|AI996806, gb|AI100291 come from this gene
gi|12083250|gb|AAG48784.1|AF332421_1 unknown protein
[Arabidopsis thaliana] gi|14532540|gb|AAK63998.1|
At1g19180/T29M8_5 [Arabidopsis thaliana]
gi|17473768|gb|AAL38322.1| unknown protein [Arabidopsis
thaliana] gi|19548055|gb|AAL87391.1| At1g19180/T29M8_5
[Arabidopsis thaliana] gi|20148609|gb|AAM10195.1|
unknown protein [Arabidopsis thaliana]
Length = 253
Score = 66.2 bits (160), Expect = 7e-10
Identities = 54/164 (32%), Positives = 80/164 (47%), Gaps = 1/164 (0%)
Frame = -2
Query: 893 SALESSPHGDSVDGVATNKSVAASGLNAVIPNTSKVTIFYNGSVHIYDGIPADKVHEIML 714
S+ S P D + T +SV T+ +TIFY G V +++ A+K E++
Sbjct: 98 SSSSSLPKEDVLKMTQTTRSVKPES------QTAPLTIFYAGQVIVFNDFSAEKAKEVIN 151
Query: 713 IAA-AAAKSVETKKIGMQSPIISPVPSRPSSPHGTTNNIASTQELCFPAKKSSICRLQEF 537
+A+ A S+ + ++S I + + ++ P TT TQE +SS L E
Sbjct: 152 LASKGTANSLAKNQTDIRSNIAT-IANQVPHPRKTT-----TQEPI----QSSPTPLTEL 201
Query: 536 PIARRHSLQSFLEKRRNRLGSKAPYSSSSTTKAAVADNIENNFS 405
PIARR SL FLEKR++R+ SKAPY KA+ N S
Sbjct: 202 PIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMS 245
>ref|NP_189930.1| putative protein; protein id: At3g43440.1 [Arabidopsis thaliana]
gi|11283485|pir||T47386 hypothetical protein T18D12.10 -
Arabidopsis thaliana gi|7288022|emb|CAB81784.1| putative
protein [Arabidopsis thaliana]
Length = 238
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -2
Query: 794 SKVTIFYNGSVHIYDGIPADKVHEIMLIAAAAAKSVETKKIGMQSPIISPVPSRPSSPHG 615
S++TI + GS ++DGIPA+KV EI+ I AAAAK+ ET +
Sbjct: 130 SQLTIIFGGSFSVFDGIPAEKVQEILHI-AAAAKATETINL------------------- 169
Query: 614 TTNNIASTQELCFPAKKSSIC-RLQEFPIARRHSLQSFLEKRRNRLGSKAPYSSSST 447
T+ N A + + F + C + PIARR SLQ F EKRR+R PYS++++
Sbjct: 170 TSINPALKRAISFSNASTVACVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTS 226
Score = 50.8 bits (120), Expect = 3e-05
Identities = 33/105 (31%), Positives = 52/105 (49%)
Frame = -2
Query: 797 TSKVTIFYNGSVHIYDGIPADKVHEIMLIAAAAAKSVETKKIGMQSPIISPVPSRPSSPH 618
++++TI + GS +++G+PA KV EI+ IA A +TK + +P ++
Sbjct: 43 STQLTIIFGGSCRVFNGVPAQKVQEIIRIAFAGK---QTKNVTGINPALN---------- 89
Query: 617 GTTNNIASTQELCFPAKKSSICRLQEFPIARRHSLQSFLEKRRNR 483
+ S + + PIARR SLQ FLEKRR+R
Sbjct: 90 ----------------RALSFSTVADLPIARRRSLQRFLEKRRDR 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 891,651,095
Number of Sequences: 1393205
Number of extensions: 19990144
Number of successful extensions: 60295
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 57055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60198
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 58221615497
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
