Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004652A_C01 KMC004652A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89718.1| putative ribonucleoprotein [Oryza sativa (japoni... 151 3e-36
pir||T01382 ribonucleoprotein homolog T4I9.1 - Arabidopsis thali... 141 4e-33
ref|NP_567249.1| RNA-binding CELF protein, putative; protein id:... 141 4e-33
sp|P28659|CUG1_MOUSE CUG triplet repeat RNA-binding protein 1 (C... 136 1e-31
sp|Q92879|CUG1_HUMAN CUG triplet repeat RNA-binding protein 1 (C... 136 1e-31
>dbj|BAB89718.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
gi|20161317|dbj|BAB90241.1| putative ribonucleoprotein
[Oryza sativa (japonica cultivar-group)]
Length = 460
Score = 151 bits (382), Expect = 3e-36
Identities = 73/91 (80%), Positives = 82/91 (89%), Gaps = 1/91 (1%)
Frame = -1
Query: 482 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 303
GPPGANLFIYHIPQ++GDQDL+NAFQ FGRV+SAKVFVDKATG SKCFGFVSYDSP +AQ
Sbjct: 370 GPPGANLFIYHIPQDYGDQDLSNAFQRFGRVLSAKVFVDKATGSSKCFGFVSYDSPASAQ 429
Query: 302 SAISMMNGYQLGGKKLKVQHKRDN-KPGKPY 213
+AI +MNG+QLG KKLKVQ KRDN K KP+
Sbjct: 430 AAIGVMNGFQLGSKKLKVQLKRDNSKHSKPF 460
Score = 31.2 bits (69), Expect = 6.2
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 464 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 285
LF+ +P+ + +L FQ V V DKAT S+ F+ S E A A++
Sbjct: 42 LFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNAY 101
Query: 284 -NGYQLGGKKLKVQHK 240
N + L G +Q K
Sbjct: 102 HNKHTLPGASSPLQVK 117
>pir||T01382 ribonucleoprotein homolog T4I9.1 - Arabidopsis thaliana
gi|3924594|gb|AAC79095.1| putative ribonucleoprotein
[Arabidopsis thaliana] gi|4262139|gb|AAD14439.1|
putative ribonucleoprotein [Arabidopsis thaliana]
gi|7270181|emb|CAB77796.1| putative ribonucleoprotein
[Arabidopsis thaliana]
Length = 492
Score = 141 bits (355), Expect = 4e-33
Identities = 70/89 (78%), Positives = 77/89 (85%)
Frame = -1
Query: 482 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 303
GP GANLFIY+IP+EFGDQ+LA AFQ FG V+SAKVFVDKATGVSKCFGFVSYDS AAQ
Sbjct: 345 GPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQ 404
Query: 302 SAISMMNGYQLGGKKLKVQHKRDNKPGKP 216
+AI MMNG LGGKKLKVQ KRD+ G+P
Sbjct: 405 NAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433
>ref|NP_567249.1| RNA-binding CELF protein, putative; protein id: At4g03110.1,
supported by cDNA: 114653. [Arabidopsis thaliana]
gi|21536899|gb|AAM61231.1| putative ribonucleoprotein
[Arabidopsis thaliana]
Length = 441
Score = 141 bits (355), Expect = 4e-33
Identities = 70/89 (78%), Positives = 77/89 (85%)
Frame = -1
Query: 482 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 303
GP GANLFIY+IP+EFGDQ+LA AFQ FG V+SAKVFVDKATGVSKCFGFVSYDS AAQ
Sbjct: 345 GPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQ 404
Query: 302 SAISMMNGYQLGGKKLKVQHKRDNKPGKP 216
+AI MMNG LGGKKLKVQ KRD+ G+P
Sbjct: 405 NAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433
>sp|P28659|CUG1_MOUSE CUG triplet repeat RNA-binding protein 1 (CUG-BP1) (RNA-binding
protein BRUNOL-2) (Deadenylation factor CUG-BP)
(Deadenylation factor EDEN-BP) (Brain protein F41)
gi|12054715|emb|CAC20707.1| deadenylation factor EDEN-BP
[Mus musculus] gi|18204729|gb|AAH21393.1| CUG triplet
repeat, RNA binding protein 1 [Mus musculus]
Length = 486
Score = 136 bits (342), Expect = 1e-31
Identities = 62/90 (68%), Positives = 72/90 (79%)
Frame = -1
Query: 482 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 303
GP GANLFIYH+PQEFGDQDL F PFG V+SAKVF+DK T +SKCFGFVSYD+P +AQ
Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456
Query: 302 SAISMMNGYQLGGKKLKVQHKRDNKPGKPY 213
+AI MNG+Q+G K+LKVQ KR KPY
Sbjct: 457 AAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
>sp|Q92879|CUG1_HUMAN CUG triplet repeat RNA-binding protein 1 (CUG-BP1) (RNA-binding
protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa
Nuclear polyadenylated RNA-binding protein) (EDEN-BP)
gi|8745535|gb|AAF78955.1|AF267533_1 CUG-binding protein
LYLQ isoform; CUG-BP+LYLQ [Homo sapiens]
gi|9246973|gb|AAF86230.1|AF248648_1 RNA-binding protein
BRUNOL2 [Homo sapiens] gi|12053580|emb|CAC20566.1|
deadenylation factor CUG-BP [Homo sapiens]
Length = 486
Score = 136 bits (342), Expect = 1e-31
Identities = 62/90 (68%), Positives = 72/90 (79%)
Frame = -1
Query: 482 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 303
GP GANLFIYH+PQEFGDQDL F PFG V+SAKVF+DK T +SKCFGFVSYD+P +AQ
Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456
Query: 302 SAISMMNGYQLGGKKLKVQHKRDNKPGKPY 213
+AI MNG+Q+G K+LKVQ KR KPY
Sbjct: 457 AAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,876,667
Number of Sequences: 1393205
Number of extensions: 7229754
Number of successful extensions: 19172
Number of sequences better than 10.0: 1885
Number of HSP's better than 10.0 without gapping: 17702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18886
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
