Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004649A_C01 KMC004649A_c01
(402 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_787662.1| adenylate kinase [Tropheryma whipplei str. Twis... 31 3.2
gb|AAC72443.1| orf61 [Streptococcus thermophilus bacteriophage S... 31 4.2
gb|AAM54702.1|AF515661_1 UDP-N-acetylglucosamine pyrophosphoryla... 31 4.2
gb|AAL38051.2| chitin synthase [Manduca sexta] 30 5.5
ref|NP_342392.1| Hypothetical protein [Sulfolobus solfataricus] ... 30 5.5
>ref|NP_787662.1| adenylate kinase [Tropheryma whipplei str. Twist]
gi|28572386|ref|NP_789166.1| adenylate kinase
[Tropheryma whipplei TW08/27]
gi|28410517|emb|CAD66903.1| adenylate kinase [Tropheryma
whipplei TW08/27] gi|28476543|gb|AAO44631.1| adenylate
kinase [Tropheryma whipplei str. Twist]
Length = 186
Score = 31.2 bits (69), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -3
Query: 367 IEDNVPYAVSEDCDDKNQISTGVFLDGY 284
+ D+ + EDC DK +S+G LDGY
Sbjct: 55 VSDSTTNRIVEDCLDKEDVSSGFVLDGY 82
>gb|AAC72443.1| orf61 [Streptococcus thermophilus bacteriophage Sfi21]
Length = 61
Score = 30.8 bits (68), Expect = 4.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 240 FTFSCCRNLRRLFFTPRHCCF---TIFCIGIEVNSINFGYDLKWV*NIR 103
FT +CC NLR L +CCF I IE+ IN+ WV I+
Sbjct: 3 FTVTCCNNLRLLSNHNHYCCFLRLVFVPIKIEIMPINW-LIFSWVKKIK 50
>gb|AAM54702.1|AF515661_1 UDP-N-acetylglucosamine pyrophosphorylase [Giardia intestinalis]
gi|28396137|gb|AAO39051.1| UDP-N-acetylglucosamine
pyrophosphorylase [Giardia intestinalis]
gi|29250937|gb|EAA42424.1| GLP_137_104115_105425
[Giardia lamblia ATCC 50803]
Length = 436
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/54 (27%), Positives = 26/54 (47%)
Frame = +2
Query: 134 PKLIEFTSIPMQNIVKQQCLGVKNSLLKFLQQEKVKSVLQKDN*ISTKYHIAIK 295
P ++E++ +P Q + N +L E+V ++K + YHIAIK
Sbjct: 307 PSVLEYSELPSDYSYASQYANIMNHVLSLAYLERVAGYMEKLDVEVVPYHIAIK 360
>gb|AAL38051.2| chitin synthase [Manduca sexta]
Length = 1563
Score = 30.4 bits (67), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -3
Query: 391 PSVQRWSDIEDNVPYAVSEDCDDKNQIS 308
P +Q W D+ D Y + ED D+K +IS
Sbjct: 1233 PEIQFWKDLLDKYLYPIDEDKDEKARIS 1260
>ref|NP_342392.1| Hypothetical protein [Sulfolobus solfataricus]
gi|25393474|pir||G90240 hypothetical protein SSO0901
[imported] - Sulfolobus solfataricus
gi|13814078|gb|AAK41182.1| Hypothetical protein
[Sulfolobus solfataricus]
Length = 107
Score = 30.4 bits (67), Expect = 5.5
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -2
Query: 206 CSSHRDTVALLYFALELR*TQSISVMI*NGYRTLELKI*RHINFRL 69
C+ ++DT+ L+YF+ +L + S+ I + T ++I R +N RL
Sbjct: 45 CAPNQDTLLLIYFSSQLSKDMNASLKIMSNNATYVVEIMREVNSRL 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,412,499
Number of Sequences: 1393205
Number of extensions: 5952878
Number of successful extensions: 13327
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13316
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
