Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004646A_C01 KMC004646A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199010.1| putative protein; protein id: At5g41950.1, supp... 167 7e-41
gb|AAK39589.1|AC025296_24 unknown protein [Oryza sativa] 146 2e-34
gb|EAA38792.1| GLP_231_13826_17554 [Giardia lamblia ATCC 50803] 33 1.9
ref|NP_650550.1| CG14885-PA [Drosophila melanogaster] gi|2317147... 32 5.6
ref|NP_799144.1| cystathionine gamma-synthase [Vibrio parahaemol... 32 5.6
>ref|NP_199010.1| putative protein; protein id: At5g41950.1, supported by cDNA:
157482. [Arabidopsis thaliana]
gi|9757940|dbj|BAB08428.1|
gb|AAF32311.1~gene_id:MJC20.5~similar to unknown protein
[Arabidopsis thaliana] gi|21553690|gb|AAM62783.1|
unknown [Arabidopsis thaliana]
gi|22135938|gb|AAM91551.1| putative protein [Arabidopsis
thaliana]
Length = 565
Score = 167 bits (423), Expect = 7e-41
Identities = 82/119 (68%), Positives = 98/119 (81%), Gaps = 1/119 (0%)
Frame = -3
Query: 510 PHNDWKRSEFFLDHEKLQQIPKGEHRPLPQSLSSRPVD-SMSGDKKNIKVDIADIVSVSA 334
PH+DWKR+EF L+HE+L Q+ K E R + ++LS + S + ++K +KV+I +IVSV+
Sbjct: 447 PHSDWKRTEFELNHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNITEIVSVTP 506
Query: 333 CADLTLPPGAGLCIDTTHGSVFLVADSWESLDGWLDAIRLVYTIYVRGKSDVLAGIIAG 157
CADLTLPPGAGLCIDT HG VFLVADSWESLDGWLDAIRLVYTIY RGKSDVLAGII G
Sbjct: 507 CADLTLPPGAGLCIDTIHGPVFLVADSWESLDGWLDAIRLVYTIYARGKSDVLAGIITG 565
>gb|AAK39589.1|AC025296_24 unknown protein [Oryza sativa]
Length = 472
Score = 146 bits (368), Expect = 2e-34
Identities = 74/118 (62%), Positives = 90/118 (75%)
Frame = -3
Query: 510 PHNDWKRSEFFLDHEKLQQIPKGEHRPLPQSLSSRPVDSMSGDKKNIKVDIADIVSVSAC 331
PH +W+RS+F L+HE+LQQ+ + P S S VDS +K ++ +ADIVSVSAC
Sbjct: 361 PHKEWERSQFVLNHEELQQVNASDQ---PPSQSPGHVDS---GRKLFRIVVADIVSVSAC 414
Query: 330 ADLTLPPGAGLCIDTTHGSVFLVADSWESLDGWLDAIRLVYTIYVRGKSDVLAGIIAG 157
ADLTLPPGAGL IDT HG FLVAD+WE++D WLDAIRLVYTI+ RG+SDVLAGII G
Sbjct: 415 ADLTLPPGAGLRIDTIHGPRFLVADNWETIDSWLDAIRLVYTIFARGRSDVLAGIITG 472
>gb|EAA38792.1| GLP_231_13826_17554 [Giardia lamblia ATCC 50803]
Length = 1242
Score = 33.1 bits (74), Expect = 1.9
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 360 IADIVSVSACADLTLPPG--AGLCIDTTHGSVFLVADSWESLDGWLDAIRLVYTIYVRGK 187
+ADIVS ADLTL + L +D H L + ++ LD L I LV I+++G
Sbjct: 713 LADIVSCVTPADLTLYDNTVSLLKLDPLH----LQSAAYYELDALL-RIFLVSLIWLKGS 767
Query: 186 SDVLAGIIAG*I*FLFN-VSPI*FVKFRT 103
S V GI+ FLFN + PI FV R+
Sbjct: 768 SRVSEGILDN---FLFNLLMPITFVTLRS 793
>ref|NP_650550.1| CG14885-PA [Drosophila melanogaster] gi|23171476|gb|AAF55322.2|
CG14885-PA [Drosophila melanogaster]
Length = 667
Score = 31.6 bits (70), Expect = 5.6
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +2
Query: 143 KNYIHPAIIPASTSLLPRT*MV*TRRIASSHPSNDSQESATKKTDP*VVSMQRPAPGGKV 322
+NY + A T L + + + SHP +D + + + DP +R + G +
Sbjct: 319 ENYDEMDLNEAQTMALAKA-----QEFSESHPVDDDESAREDEIDP-ATGERRSSQGLRS 372
Query: 323 RSAHADTETISAISTLIFFLSPLIESTGLLERL*GSGL 436
I + +LIF SPLIE+ L+ L G GL
Sbjct: 373 ILLKGQMFYIKDVDSLIFLCSPLIEN---LDELHGIGL 407
>ref|NP_799144.1| cystathionine gamma-synthase [Vibrio parahaemolyticus RIMD 2210633]
gi|28807775|dbj|BAC61028.1| cystathionine gamma-synthase
[Vibrio parahaemolyticus]
Length = 386
Score = 31.6 bits (70), Expect = 5.6
Identities = 26/101 (25%), Positives = 46/101 (44%)
Frame = -3
Query: 465 KLQQIPKGEHRPLPQSLSSRPVDSMSGDKKNIKVDIADIVSVSACADLTLPPGAGLCIDT 286
K+Q + + + + L +L+ +P + N V + DI +V A GA + +D
Sbjct: 119 KVQFVDQSDEQALEAALAKKPKLILLETPSNPLVRVVDIAAVCEKAKQV---GALVAVDN 175
Query: 285 THGSVFLVADSWESLDGWLDAIRLVYTIYVRGKSDVLAGII 163
T FL + L+ D + T Y+ G SDV+ G++
Sbjct: 176 T----FLTPVYQKPLELGADFVIHSTTKYINGHSDVIGGVV 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,687,239
Number of Sequences: 1393205
Number of extensions: 9042094
Number of successful extensions: 21826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21818
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
