Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004642A_C01 KMC004642A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [... 165 3e-40
gb|AAM65550.1| unknown [Arabidopsis thaliana] 151 5e-36
ref|NP_199285.1| putative protein; protein id: At5g44720.1, supp... 151 5e-36
ref|NP_251712.1| hypothetical protein [Pseudomonas aeruginosa PA... 81 8e-15
ref|NP_625317.1| conserved hypothetical protein SCG20A.02 [Strep... 80 2e-14
>ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [Arabidopsis
thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22
[Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1|
unknown protein [Arabidopsis thaliana]
Length = 318
Score = 165 bits (418), Expect = 3e-40
Identities = 78/122 (63%), Positives = 94/122 (76%)
Frame = -3
Query: 564 EPIRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIAGREP 385
EP+ INRFRPNI V+GCEPF+EDLW+EI I F+F G KLC RCKV TI+QETGI G+EP
Sbjct: 196 EPVPINRFRPNIFVDGCEPFAEDLWTEILINGFTFHGVKLCSRCKVPTISQETGIGGQEP 255
Query: 384 LETLATFRSGKVIRPNGKNKGAVYFGQNLVWNWNDSSAKGSGKVLKVGDPVYVLRKVSSP 205
+ETL TFRS KV++P K G +YFGQN+V W D G GK +++GD V VLRK+SSP
Sbjct: 256 IETLRTFRSDKVLQPKSKPHGKIYFGQNMV--WKDGFGDGIGKTIEIGDSVVVLRKLSSP 313
Query: 204 AE 199
AE
Sbjct: 314 AE 315
>gb|AAM65550.1| unknown [Arabidopsis thaliana]
Length = 308
Score = 151 bits (382), Expect = 5e-36
Identities = 71/124 (57%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Frame = -3
Query: 564 EPIRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIAGR-E 388
EP+ INRFRPNILV+ C+PF EDLW EIKI F G +LC RCKV T+NQETG+ G+ E
Sbjct: 182 EPVPINRFRPNILVDNCDPFGEDLWDEIKINDLVFQGVRLCSRCKVPTVNQETGVMGKAE 241
Query: 387 PLETLATFRSGKVIRPNGKNKGAVYFGQNLVWNWNDSSAKGSG-KVLKVGDPVYVLRKVS 211
P ETL FRS V+ P+ K +G V+FG+ +VWNWN ++ +G G K +KVGD + V+RK+
Sbjct: 242 PTETLMKFRSDNVLMPDKKPRGKVFFGKEMVWNWNLTNTEGEGKKTIKVGDTISVIRKIP 301
Query: 210 SPAE 199
S AE
Sbjct: 302 SRAE 305
>ref|NP_199285.1| putative protein; protein id: At5g44720.1, supported by cDNA:
4029., supported by cDNA: gi_19423896, supported by
cDNA: gi_21280995 [Arabidopsis thaliana]
gi|2660677|gb|AAC79148.1| unknown protein [Arabidopsis
thaliana] gi|9758376|dbj|BAB08825.1| contains similarity
to unknown~gene_id:K23L20.6 [Arabidopsis thaliana]
gi|19423897|gb|AAL87349.1| unknown protein [Arabidopsis
thaliana] gi|21280996|gb|AAM45094.1| unknown protein
[Arabidopsis thaliana]
Length = 308
Score = 151 bits (382), Expect = 5e-36
Identities = 71/124 (57%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Frame = -3
Query: 564 EPIRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIAGR-E 388
EP+ INRFRPNILV+ C+PF EDLW EIKI F G +LC RCKV T+NQETG+ G+ E
Sbjct: 182 EPVPINRFRPNILVDNCDPFGEDLWDEIKINDLVFQGVRLCSRCKVPTVNQETGVMGKAE 241
Query: 387 PLETLATFRSGKVIRPNGKNKGAVYFGQNLVWNWNDSSAKGSG-KVLKVGDPVYVLRKVS 211
P ETL FRS V+ P+ K +G V+FG+ +VWNWN ++ +G G K +KVGD + V+RK+
Sbjct: 242 PTETLMKFRSDNVLMPDKKPRGKVFFGKEMVWNWNLTNTEGEGKKTIKVGDTISVIRKIP 301
Query: 210 SPAE 199
S AE
Sbjct: 302 SRAE 305
>ref|NP_251712.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11349764|pir||C83268 hypothetical protein PA3022
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9949125|gb|AAG06410.1|AE004727_6 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 268
Score = 81.3 bits (199), Expect = 8e-15
Identities = 50/115 (43%), Positives = 66/115 (56%), Gaps = 2/115 (1%)
Frame = -3
Query: 561 PIRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIAG--RE 388
P+ + RFRPN++VEG F+ED W I+IG F+ +K C RC +TT++ TG RE
Sbjct: 170 PLEMLRFRPNLVVEGSAAFAEDGWKRIRIGSVEFVVAKPCSRCILTTLDPATGERNEDRE 229
Query: 387 PLETLATFRSGKVIRPNGKNKGAVYFGQNLVWNWNDSSAKGSGKVLKVGDPVYVL 223
PL TL T+R + GAV FGQNL+ A G G L+VG PV +L
Sbjct: 230 PLTTLKTYR---------EKDGAVLFGQNLI-------ALGQGS-LEVGMPVEIL 267
>ref|NP_625317.1| conserved hypothetical protein SCG20A.02 [Streptomyces coelicolor
A3(2)] gi|8894811|emb|CAB96007.1| conserved hypothetical
protein SCG20A.02 [Streptomyces coelicolor A3(2)]
Length = 275
Score = 79.7 bits (195), Expect = 2e-14
Identities = 49/112 (43%), Positives = 64/112 (56%)
Frame = -3
Query: 561 PIRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIAGREPL 382
P+ ++RFRPN++V G EP++ED WS I +G +K CGRC VTT +Q T G EPL
Sbjct: 179 PLPMDRFRPNLVVSGTEPWAEDRWSRIAVGEVVLRVAKPCGRCVVTTTDQGTADRGAEPL 238
Query: 381 ETLATFRSGKVIRPNGKNKGAVYFGQNLVWNWNDSSAKGSGKVLKVGDPVYV 226
+L R R +GK + FGQNLV G G V +VGDPV +
Sbjct: 239 HSLGRHR-----RVDGK----LVFGQNLV-------PLGPGTV-RVGDPVRI 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,623,250
Number of Sequences: 1393205
Number of extensions: 10011053
Number of successful extensions: 26490
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 25915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
