Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004640A_C01 KMC004640A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S60306 BPF-1 protein - parsley gi|396197|emb|CAA48413.1| BP... 191 8e-48
emb|CAC19789.1| MYB-like DNA-binding protein [Catharanthus roseus] 190 1e-47
pir||T51231 H-protein promoter binding factor-1 [imported] - Ara... 189 4e-47
ref|NP_196886.1| H-protein promoter binding factor-1 (gb|AAC2459... 189 4e-47
gb|AAN39330.1| telomere binding protein TBP1 [Nicotiana glutinosa] 184 1e-45
>pir||S60306 BPF-1 protein - parsley gi|396197|emb|CAA48413.1| BPF-1
[Petroselinum crispum] gi|441310|emb|CAA44518.1| BPF-1
[Petroselinum crispum]
Length = 689
Score = 191 bits (485), Expect = 8e-48
Identities = 89/104 (85%), Positives = 100/104 (95%)
Frame = -1
Query: 699 QKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKW 520
QKTKR+D +QRRTRRPF+V EVEALV AVE LGTGRWRDVK+RSF++A+HRTYVDLKDKW
Sbjct: 571 QKTKRSDLSQRRTRRPFSVSEVEALVEAVETLGTGRWRDVKMRSFDDANHRTYVDLKDKW 630
Query: 519 KTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGK 388
KTLVHTASI+PQQRRGEPVPQ+LLDRVLAAH+YWSQHQ+KQHGK
Sbjct: 631 KTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQHQSKQHGK 674
>emb|CAC19789.1| MYB-like DNA-binding protein [Catharanthus roseus]
Length = 693
Score = 190 bits (483), Expect = 1e-47
Identities = 94/117 (80%), Positives = 104/117 (88%)
Frame = -1
Query: 699 QKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKW 520
QK KR + +QRRTRRPF+V EVEALV AVE LGTGRWRDVK+R+F+NADHRTYVDLKDKW
Sbjct: 576 QKPKRCESSQRRTRRPFSVAEVEALVEAVEILGTGRWRDVKMRAFDNADHRTYVDLKDKW 635
Query: 519 KTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGKPQVGPGTLKIAEA 349
KTLVHTASISPQQRRGEPVPQELLDRVL+AH+YWSQHQ+KQ GK V P LKI +A
Sbjct: 636 KTLVHTASISPQQRRGEPVPQELLDRVLSAHAYWSQHQSKQTGKHHVEP--LKIMDA 690
>pir||T51231 H-protein promoter binding factor-1 [imported] - Arabidopsis
thaliana gi|3264778|gb|AAC24592.1| H-protein promoter
binding factor-1 [Arabidopsis thaliana]
Length = 640
Score = 189 bits (479), Expect = 4e-47
Identities = 93/117 (79%), Positives = 101/117 (85%)
Frame = -1
Query: 699 QKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKW 520
+K KR + +QRRTRRPF+V EVEALV AVEE+GTGRWRDVKLRSFENA HRTYVDLKDKW
Sbjct: 522 EKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKW 581
Query: 519 KTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGKPQVGPGTLKIAEA 349
KTLVHTASISPQQRRGEPVPQELLDRVL AH YW+QHQ KQ+GK QV T + EA
Sbjct: 582 KTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWTQHQMKQNGKHQV--ATTMVVEA 636
>ref|NP_196886.1| H-protein promoter binding factor-1 (gb|AAC24592.1); protein id:
At5g13820.1, supported by cDNA: gi_13641339, supported
by cDNA: gi_3264777 [Arabidopsis thaliana]
gi|10177648|dbj|BAB11110.1| H-protein promoter binding
factor-1 [Arabidopsis thaliana]
gi|13641340|gb|AAK31590.1| telomeric DNA-binding protein
1 [Arabidopsis thaliana]
Length = 640
Score = 189 bits (479), Expect = 4e-47
Identities = 93/117 (79%), Positives = 101/117 (85%)
Frame = -1
Query: 699 QKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKW 520
+K KR + +QRRTRRPF+V EVEALV AVEE+GTGRWRDVKLRSFENA HRTYVDLKDKW
Sbjct: 522 EKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKW 581
Query: 519 KTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGKPQVGPGTLKIAEA 349
KTLVHTASISPQQRRGEPVPQELLDRVL AH YW+QHQ KQ+GK QV T + EA
Sbjct: 582 KTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWTQHQMKQNGKHQV--ATTMVVEA 636
>gb|AAN39330.1| telomere binding protein TBP1 [Nicotiana glutinosa]
Length = 681
Score = 184 bits (467), Expect = 1e-45
Identities = 89/121 (73%), Positives = 104/121 (85%)
Frame = -1
Query: 699 QKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKW 520
QK+KR++ +QRR RRPF+V EVEALV AVE LGTGRWRDVK+R+F+NADHRTYVDLKDKW
Sbjct: 564 QKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW 623
Query: 519 KTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGKPQVGPGTLKIAEAAPE 340
KTLVHTASI+PQQRRGEPVPQ+LLDRVLAAH+YWSQ Q KQH +P LKI +A +
Sbjct: 624 KTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGKQHVEP------LKILDAKAQ 677
Query: 339 R 337
+
Sbjct: 678 K 678
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,346,312
Number of Sequences: 1393205
Number of extensions: 13885127
Number of successful extensions: 36454
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 34933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36400
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
