Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004639A_C01 KMC004639A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50662 UVB-resistance protein UVR8 [imported] - Arabidopsis... 55 6e-07
ref|NP_201191.1| UVB-resistance protein UVR8 (gb|AAD43920.1); pr... 55 6e-07
emb|CAD40810.1| OSJNBa0006B20.1 [Oryza sativa (japonica cultivar... 33 3.4
ref|NP_613102.1| unknown [Mamestra configurata nucleopolyhedrovi... 32 4.5
ref|NP_015289.1| plasma membrane ATPase; Pma2p [Saccharomyces ce... 32 5.9
>pir||T50662 UVB-resistance protein UVR8 [imported] - Arabidopsis thaliana
gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance
protein UVR8 [Arabidopsis thaliana]
Length = 440
Score = 55.1 bits (131), Expect = 6e-07
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = -3
Query: 583 KAFSVDGSSGQHIESSN-HSSSGKSTASLSERYAVVPNESASGSFATTSDREDKFDVSVP 407
+A SVDG+SGQHIESSN SSGKS S +ERYAVVP+E+ S + + D+SVP
Sbjct: 375 EALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET---GLTDGSSKGNGGDISVP 431
>ref|NP_201191.1| UVB-resistance protein UVR8 (gb|AAD43920.1); protein id:
At5g63860.1, supported by cDNA: gi_5478529 [Arabidopsis
thaliana] gi|10177674|dbj|BAB11034.1| UVB-resistance
protein UVR8 [Arabidopsis thaliana]
gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6
[Arabidopsis thaliana] gi|23308399|gb|AAN18169.1|
At5g63860/MGI19_6 [Arabidopsis thaliana]
Length = 440
Score = 55.1 bits (131), Expect = 6e-07
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = -3
Query: 583 KAFSVDGSSGQHIESSN-HSSSGKSTASLSERYAVVPNESASGSFATTSDREDKFDVSVP 407
+A SVDG+SGQHIESSN SSGKS S +ERYAVVP+E+ S + + D+SVP
Sbjct: 375 EALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET---GLTDGSSKGNGGDISVP 431
>emb|CAD40810.1| OSJNBa0006B20.1 [Oryza sativa (japonica cultivar-group)]
Length = 449
Score = 32.7 bits (73), Expect = 3.4
Identities = 22/58 (37%), Positives = 29/58 (49%)
Frame = -3
Query: 580 AFSVDGSSGQHIESSNHSSSGKSTASLSERYAVVPNESASGSFATTSDREDKFDVSVP 407
A S DG + +E S K S SERYA+VP+E S T+ R + D +VP
Sbjct: 382 ALSPDGPGCKKLEPSTAVPFAKVWVSPSERYAIVPDEKVPNSGEGTA-RGNGADANVP 438
>ref|NP_613102.1| unknown [Mamestra configurata nucleopolyhedrovirus A]
gi|20043292|gb|AAM09127.1| unknown [Mamestra configurata
nucleopolyhedrovirus]
Length = 236
Score = 32.3 bits (72), Expect = 4.5
Identities = 19/56 (33%), Positives = 32/56 (56%)
Frame = +3
Query: 402 LYGTLTSNLSSLSEVVANDPEADSFGTTAYLSDSEAVDFPDEE*FEDSICCPLDPS 569
L+ T T+ + +VVA P D++ YL+D + V+ PD+ F ++ C P+D S
Sbjct: 20 LFYTNTNEPVKVPDVVAEGPTCDTY----YLND-KLVNCPDKHEFRETKCVPIDES 70
>ref|NP_015289.1| plasma membrane ATPase; Pma2p [Saccharomyces cerevisiae]
gi|1709667|sp|P19657|PMA2_YEAST Plasma membrane ATPase 2
(Proton pump 2) gi|2144522|pir||PXBY2P H+-exporting
ATPase (EC 3.6.3.6) 2, plasma membrane - yeast
(Saccharomyces cerevisiae) gi|1171422|gb|AAB68184.1|
Pma2p: Plasma membrane ATPase [Saccharomyces cerevisiae]
Length = 947
Score = 32.0 bits (71), Expect = 5.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 568 DGSSGQHIESSNHSSSGKSTASLSERYAVVPNESASGSFATTSDREDKFD 419
DG + +++ SSS ++ S S A VP ++A+ S A SD ++ D
Sbjct: 22 DGDDPANNSAASSSSSSSTSTSASSSAAAVPRKAAAASAADDSDSDEDID 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,974,076
Number of Sequences: 1393205
Number of extensions: 10050601
Number of successful extensions: 21639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21562
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
