Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004637A_C01 KMC004637A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20077.1| contains ESTs AU068695(C50045),AU166730(C50045)~... 45 4e-04
gb|AAL66203.1|AF386521_1 putative Tub family protein [Pyrus comm... 44 9e-04
gb|AAN72008.1| unknown protein [Arabidopsis thaliana] 44 0.001
dbj|BAC01219.1| putative tubby protein [Oryza sativa (japonica c... 44 0.001
dbj|BAA82866.1| tubby-like protein [Lemna paucicostata] 44 0.001
>dbj|BAC20077.1| contains ESTs AU068695(C50045),AU166730(C50045)~similar to tubby
protein [Oryza sativa (japonica cultivar-group)]
Length = 406
Score = 45.4 bits (106), Expect = 4e-04
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2
Query: 522 ISAFQAFAICLSSFDTKIACE 460
ISAFQAFAICLSSFDTKIACE
Sbjct: 386 ISAFQAFAICLSSFDTKIACE 406
>gb|AAL66203.1|AF386521_1 putative Tub family protein [Pyrus communis]
Length = 219
Score = 44.3 bits (103), Expect = 9e-04
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = -2
Query: 522 ISAFQAFAICLSSFDTKIACE 460
ISAFQAF+ICLSSFDTKIACE
Sbjct: 199 ISAFQAFSICLSSFDTKIACE 219
>gb|AAN72008.1| unknown protein [Arabidopsis thaliana]
Length = 267
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -2
Query: 522 ISAFQAFAICLSSFDTKIACE 460
+SAFQAFAICLSSFDTK+ACE
Sbjct: 247 LSAFQAFAICLSSFDTKLACE 267
>dbj|BAC01219.1| putative tubby protein [Oryza sativa (japonica cultivar-group)]
Length = 448
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -2
Query: 522 ISAFQAFAICLSSFDTKIACE 460
+SAFQAFAICLSSFDTK+ACE
Sbjct: 428 LSAFQAFAICLSSFDTKLACE 448
>dbj|BAA82866.1| tubby-like protein [Lemna paucicostata]
Length = 428
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -2
Query: 522 ISAFQAFAICLSSFDTKIACE 460
+SAFQAFAICLSSFDTK+ACE
Sbjct: 408 LSAFQAFAICLSSFDTKLACE 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,379,668
Number of Sequences: 1393205
Number of extensions: 8594827
Number of successful extensions: 21407
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 20877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21403
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
