Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004632A_C01 KMC004632A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175662.1| hypothetical protein; protein id: At1g52530.1 [... 199 3e-50
gb|EAA00959.1| ebiP4146 [Anopheles gambiae str. PEST] 35 0.50
ref|NP_036584.1| tumor necrosis factor receptor 13B; transmembra... 33 1.9
ref|ZP_00089232.1| hypothetical protein [Azotobacter vinelandii] 33 2.5
dbj|BAB02877.1| gb|AAC35225.1~gene_id:MVC8.5~strong similarity t... 33 3.2
>ref|NP_175662.1| hypothetical protein; protein id: At1g52530.1 [Arabidopsis
thaliana] gi|25373276|pir||H96565 F6D8.25 [imported] -
Arabidopsis thaliana
gi|5903067|gb|AAD55626.1|AC008016_36 F6D8.25
[Arabidopsis thaliana]
Length = 344
Score = 199 bits (505), Expect = 3e-50
Identities = 96/122 (78%), Positives = 108/122 (87%)
Frame = -3
Query: 566 ISKYGDLRVQVSTTLISLGAEFRNLLVIGEQANAPAEDQNLTAQTRSARSILRGDAQSVQ 387
ISK+GDL+VQVSTTLI LG EF+ L VIGE++ AP ED+NL+AQ RS R+I RGDAQSVQ
Sbjct: 222 ISKHGDLQVQVSTTLIRLGIEFQRLSVIGEKSQAPVEDRNLSAQARSERAIARGDAQSVQ 281
Query: 386 VSVKHFAKSLQCHLAKPDCAFYGVAPQGSCLTVIFQFFVPGTRHTDKSISLHCRLPVLDP 207
VSVKHF+KSLQCHL KPD FYG+APQG+CLTVIFQF VPGTR TDKSISLHCRLPVLDP
Sbjct: 282 VSVKHFSKSLQCHLTKPDSTFYGIAPQGACLTVIFQFMVPGTRQTDKSISLHCRLPVLDP 341
Query: 206 GT 201
G+
Sbjct: 342 GS 343
>gb|EAA00959.1| ebiP4146 [Anopheles gambiae str. PEST]
Length = 928
Score = 35.4 bits (80), Expect = 0.50
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = -3
Query: 392 VQVSVKHFAKS------LQCHLAKPDCAFYGVAPQGSCLTVIFQFFVPGTRHTDKSISLH 231
++ +++HF + LQC + C Y +G + + QF +HTDK+IS
Sbjct: 823 LRTTIEHFYEQHKGSALLQCPVCLQICCAYRTGDEGPLMKNVHQFLAHLRKHTDKAISKR 882
Query: 230 CR---LPVLDPG 204
C L LD G
Sbjct: 883 CNKCALSFLDKG 894
>ref|NP_036584.1| tumor necrosis factor receptor 13B; transmembrane activator and
CAML interactor [Homo sapiens]
gi|21264086|sp|O14836|T13X_HUMAN Tumor necrosis factor
receptor superfamily member 13B (Transmembrane activator
and CAML interactor) gi|2554948|gb|AAC51790.1|
transmembrane activator and CAML interactor [Homo
sapiens]
Length = 293
Score = 33.5 bits (75), Expect = 1.9
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -2
Query: 480 RAGQCSC*GSKPHRSDALSEVNSE----RRCSVCAGECEAFRQESAVSPG--QAGLRFLW 319
R Q S+ H +A S V++ CS C EC A QESAV+PG W
Sbjct: 200 RPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTPGTPDPTCAGRW 259
Query: 318 GC 313
GC
Sbjct: 260 GC 261
>ref|ZP_00089232.1| hypothetical protein [Azotobacter vinelandii]
Length = 532
Score = 33.1 bits (74), Expect = 2.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +2
Query: 206 QGQGQEACNVS*LTYQCGEYQGQRTGISPSNNFPEEQPHRKRNPAW-------PGDTADS 364
+G+G+ A N S + G RTG SPS+ F E+P + AW P D D+
Sbjct: 42 RGEGELAANGSLVVRT-----GHRTGRSPSDRFIVEEPGSQHKIAWGNINRPFPTDRFDA 96
Query: 365 -WRNASHSPAQTEHLLSEL 418
W+ A+ +H +S +
Sbjct: 97 LWQRVEAYLAERDHFVSHV 115
>dbj|BAB02877.1| gb|AAC35225.1~gene_id:MVC8.5~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 695
Score = 32.7 bits (73), Expect = 3.2
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 270 DKELEYHRQTTSLRSNPIESAIRLGQVTL 356
+KELE H Q T+LR+NPIES +V L
Sbjct: 662 NKELEEHSQVTTLRTNPIESINWFREVAL 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,759,730
Number of Sequences: 1393205
Number of extensions: 10157033
Number of successful extensions: 27878
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27870
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
