Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004631A_C01 KMC004631A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60317.1| unknown [Arabidopsis thaliana] 52 3e-06
emb|CAD39778.1| OSJNBa0060B20.12 [Oryza sativa (japonica cultiva... 52 3e-06
ref|NP_174468.1| unknown protein; protein id: At1g31850.1 [Arabi... 52 3e-06
ref|NP_567575.1| putative protein; protein id: At4g19120.1, supp... 51 8e-06
pir||T04433 hypothetical protein T18B16.90 - Arabidopsis thalian... 51 8e-06
>gb|AAN60317.1| unknown [Arabidopsis thaliana]
Length = 604
Score = 52.4 bits (124), Expect = 3e-06
Identities = 21/34 (61%), Positives = 27/34 (78%)
Frame = -3
Query: 488 MRWMCHKDETEYAAEKEKMLVCQKKLWQASNSGS 387
+RW C ++ETEYA + EK+LVCQKKLW +SN S
Sbjct: 571 IRWSCRREETEYAVKSEKILVCQKKLWFSSNQTS 604
>emb|CAD39778.1| OSJNBa0060B20.12 [Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 52.4 bits (124), Expect = 3e-06
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = -3
Query: 488 MRWMCHKDETEYAAEKEKMLVCQKKLWQASNS 393
MRW C K +TEY A+KEK+L+CQKKLW N+
Sbjct: 247 MRWNCDKHDTEYKADKEKVLICQKKLWSGKNT 278
>ref|NP_174468.1| unknown protein; protein id: At1g31850.1 [Arabidopsis thaliana]
gi|25372101|pir||F86442 unknown protein [imported] -
Arabidopsis thaliana
gi|12321307|gb|AAG50728.1|AC079041_21 unknown protein
[Arabidopsis thaliana] gi|22135826|gb|AAM91099.1|
At1g31850/68069_m00154 [Arabidopsis thaliana]
gi|23463061|gb|AAN33200.1| At1g31850/68069_m00154
[Arabidopsis thaliana]
Length = 603
Score = 52.4 bits (124), Expect = 3e-06
Identities = 21/34 (61%), Positives = 27/34 (78%)
Frame = -3
Query: 488 MRWMCHKDETEYAAEKEKMLVCQKKLWQASNSGS 387
+RW C ++ETEYA + EK+LVCQKKLW +SN S
Sbjct: 570 IRWSCRREETEYAVKSEKILVCQKKLWFSSNQTS 603
>ref|NP_567575.1| putative protein; protein id: At4g19120.1, supported by cDNA:
gi_15320409 [Arabidopsis thaliana]
gi|15320410|dbj|BAB63914.1| ERD3 protein [Arabidopsis
thaliana]
Length = 600
Score = 50.8 bits (120), Expect = 8e-06
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -3
Query: 488 MRWMCHKDETEYAAEKEKMLVCQKKLWQASNSGS 387
+RW C K++TE A+ EK+L+CQKKLW +SN+ S
Sbjct: 564 LRWSCRKEQTESASANEKLLICQKKLWYSSNASS 597
>pir||T04433 hypothetical protein T18B16.90 - Arabidopsis thaliana (fragment)
gi|25372099|pir||A85216 hypothetical protein AT4g19120
[imported] - Arabidopsis thaliana
gi|4455159|emb|CAA16701.1| putative protein [Arabidopsis
thaliana] gi|7268707|emb|CAB78914.1| putative protein
[Arabidopsis thaliana]
Length = 499
Score = 50.8 bits (120), Expect = 8e-06
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -3
Query: 488 MRWMCHKDETEYAAEKEKMLVCQKKLWQASNSGS 387
+RW C K++TE A+ EK+L+CQKKLW +SN+ S
Sbjct: 463 LRWSCRKEQTESASANEKLLICQKKLWYSSNASS 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,292,451
Number of Sequences: 1393205
Number of extensions: 8804613
Number of successful extensions: 20161
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20157
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
