Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004630A_C01 KMC004630A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, ... 255 6e-67
dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein ... 233 2e-60
ref|NP_188478.1| putative chloroplast nucleoid DNA-binding prote... 218 6e-56
gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein... 218 6e-56
ref|NP_191741.1| putative protein; protein id: At3g61820.1, supp... 196 3e-49
>ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, supported by cDNA:
gi_20466515 [Arabidopsis thaliana]
gi|25518510|pir||D86385 hypothetical protein F2J7.6 -
Arabidopsis thaliana
gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical
protein [Arabidopsis thaliana]
gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis
thaliana] gi|23198172|gb|AAN15613.1| unknown protein
[Arabidopsis thaliana]
Length = 483
Score = 255 bits (651), Expect = 6e-67
Identities = 122/171 (71%), Positives = 146/171 (85%)
Frame = -1
Query: 756 NTVTAPLRRNPDLDTFYYLGLTGLSVGGEVLPIPEASFEVDAVGEGGIIVDSGTAVTRLR 577
+ V APL RN LDTFYYLGLTG+SVGGE+L IP++SFE+D G GGII+DSGTAVTRL+
Sbjct: 313 DAVVAPLLRNHQLDTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372
Query: 576 SEVYDELRDAFKRGARGLPAAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPAKN 397
+E+Y+ LRD+F +G L A GV++FDTCY+LS+KT+VEVPTVA HFP GK L LPAKN
Sbjct: 373 TEIYNSLRDSFVKGTLDLEKAAGVAMFDTCYNLSAKTTVEVPTVAFHFPGGKMLALPAKN 432
Query: 396 YLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSAHSC 244
Y+IPVDSVGTFC AFAPT SSL+IIGNVQQQGTRV FD+ANSL+GFS++ C
Sbjct: 433 YMIPVDSVGTFCLAFAPTASSLAIIGNVQQQGTRVTFDLANSLIGFSSNKC 483
>dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 504
Score = 233 bits (594), Expect = 2e-60
Identities = 113/169 (66%), Positives = 133/169 (77%)
Frame = -1
Query: 750 VTAPLRRNPDLDTFYYLGLTGLSVGGEVLPIPEASFEVDAVGEGGIIVDSGTAVTRLRSE 571
VTAPL R+P TFYY+GL+GLSVGG++L IP ++F +D+ G GG+IVDSGTAVTRL+S
Sbjct: 336 VTAPLIRSPRTSTFYYVGLSGLSVGGQILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSS 395
Query: 570 VYDELRDAFKRGARGLPAAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPAKNYL 391
Y LRDAF RG + LP GVSLFDTCYDLS +TSVEVP V+L F G EL LPAKNYL
Sbjct: 396 AYAALRDAFVRGTQSLPRTSGVSLFDTCYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYL 455
Query: 390 IPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSAHSC 244
IPVD GT+C AFAPT +++SIIGNVQQQGTRV FD A S VGF+ + C
Sbjct: 456 IPVDGAGTYCLAFAPTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTTNKC 504
>ref|NP_188478.1| putative chloroplast nucleoid DNA-binding protein; protein id:
At3g18490.1 [Arabidopsis thaliana]
gi|11994113|dbj|BAB01116.1| CND41, chloroplast nucleoid
DNA binding protein-like [Arabidopsis thaliana]
gi|23297732|gb|AAN13013.1| putative chloroplast nucleoid
DNA-binding protein [Arabidopsis thaliana]
Length = 500
Score = 218 bits (556), Expect = 6e-56
Identities = 105/169 (62%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Frame = -1
Query: 747 TAPLRRNPDLDTFYYLGLTGLSVGGEVLPIPEASFEVDAVGEGGIIVDSGTAVTRLRSEV 568
TAPL RN +DTFYY+GL+G SVGGE + +P+A F+VDA G GG+I+D GTAVTRL+++
Sbjct: 332 TAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQTQA 391
Query: 567 YDELRDAFKRGARGLP-AAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPAKNYL 391
Y+ LRDAF + L + +SLFDTCYD SS ++V+VPTVA HF GK L LPAKNYL
Sbjct: 392 YNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYL 451
Query: 390 IPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSAHSC 244
IPVD GTFCFAFAPT+SSLSIIGNVQQQGTR+ +D++ +++G S + C
Sbjct: 452 IPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
>gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein [Arabidopsis
thaliana]
Length = 500
Score = 218 bits (556), Expect = 6e-56
Identities = 105/169 (62%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Frame = -1
Query: 747 TAPLRRNPDLDTFYYLGLTGLSVGGEVLPIPEASFEVDAVGEGGIIVDSGTAVTRLRSEV 568
TAPL RN +DTFYY+GL+G SVGGE + +P+A F+VDA G GG+I+D GTAVTRL+++
Sbjct: 332 TAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQTQA 391
Query: 567 YDELRDAFKRGARGLP-AAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPAKNYL 391
Y+ LRDAF + L + +SLFDTCYD SS ++V+VPTVA HF GK L LPAKNYL
Sbjct: 392 YNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYL 451
Query: 390 IPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSAHSC 244
IPVD GTFCFAFAPT+SSLSIIGNVQQQGTR+ +D++ +++G S + C
Sbjct: 452 IPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
>ref|NP_191741.1| putative protein; protein id: At3g61820.1, supported by cDNA:
gi_14532549 [Arabidopsis thaliana]
gi|11357465|pir||T47974 hypothetical protein F15G16.210
- Arabidopsis thaliana gi|6850873|emb|CAB71112.1|
putative protein [Arabidopsis thaliana]
Length = 483
Score = 196 bits (498), Expect = 3e-49
Identities = 100/173 (57%), Positives = 123/173 (70%), Gaps = 1/173 (0%)
Frame = -1
Query: 759 RNTVTAPLRRNPDLDTFYYLGLTGLSVGGEVLP-IPEASFEVDAVGEGGIIVDSGTAVTR 583
+ +V PL NP LDTFYYL L G+SVGG +P + E+ F++DA G GG+I+DSGT+VTR
Sbjct: 312 KTSVFTPLLTNPKLDTFYYLQLLGISVGGSRVPGVSESQFKLDATGNGGVIIDSGTSVTR 371
Query: 582 LRSEVYDELRDAFKRGARGLPAAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPA 403
L Y LRDAF+ GA L A SLFDTC+DLS T+V+VPTV HF G E+ LPA
Sbjct: 372 LTQPAYVALRDAFRLGATKLKRAPSYSLFDTCFDLSGMTTVKVPTVVFHF-GGGEVSLPA 430
Query: 402 KNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSAHSC 244
NYLIPV++ G FCFAFA T SLSIIGN+QQQG RV +D+ S VGF + +C
Sbjct: 431 SNYLIPVNTEGRFCFAFAGTMGSLSIIGNIQQQGFRVAYDLVGSRVGFLSRAC 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 706,394,133
Number of Sequences: 1393205
Number of extensions: 17651246
Number of successful extensions: 140427
Number of sequences better than 10.0: 2459
Number of HSP's better than 10.0 without gapping: 81054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117041
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
