Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004629A_C02 KMC004629A_c02
(793 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180079.1| protein phosphatase 2C (PP2C); protein id: At2g... 97 2e-19
ref|NP_194914.1| protein phosphatase 2C (PP2C); protein id: At4g... 97 4e-19
gb|AAG43835.1|AF213455_1 protein phosphatase type-2C [Zea mays] 93 5e-18
ref|XP_080644.1| CG10417 [Drosophila melanogaster] gi|19921654|r... 69 1e-10
gb|EAA11252.1| agCP5708 [Anopheles gambiae str. PEST] 64 2e-09
>ref|NP_180079.1| protein phosphatase 2C (PP2C); protein id: At2g25070.1, supported
by cDNA: 11428., supported by cDNA: gi_15292878,
supported by cDNA: gi_18652942, supported by cDNA:
gi_20258908 [Arabidopsis thaliana]
gi|25355104|pir||H84643 probable protein phosphatase 2C
[imported] - Arabidopsis thaliana
gi|4559345|gb|AAD23006.1| putative protein phosphatase
2C [Arabidopsis thaliana] gi|15292879|gb|AAK92810.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
gi|18652943|dbj|BAB84700.1| protein phosphatase 2C
[Arabidopsis thaliana] gi|20258909|gb|AAM14148.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
Length = 355
Score = 97.4 bits (241), Expect = 2e-19
Identities = 51/82 (62%), Positives = 60/82 (72%), Gaps = 1/82 (1%)
Frame = -1
Query: 793 CMSSQQLVDFIQGQLKTENKLSVVCEKVFDRCLAP-TAGGEGCDNMTMILIQFKSSWNPD 617
CMSSQ+LVDFI QLK+E KLS VCEKV DRCLAP TA GEGCDNMT+IL+QFK P+
Sbjct: 277 CMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFK---KPN 333
Query: 616 TSAANQTESSAQPSEADSSSDN 551
S +S +PSE + SS +
Sbjct: 334 PSETEPEDSKPEPSEDEPSSSS 355
>ref|NP_194914.1| protein phosphatase 2C (PP2C); protein id: At4g31860.1, supported
by cDNA: gi_16209697 [Arabidopsis thaliana]
gi|7488279|pir||T06308 protein phosphatase 2C homolog
F11C18.60 - Arabidopsis thaliana
gi|4584525|emb|CAB40756.1| protein phosphatase 2C-like
protein [Arabidopsis thaliana]
gi|7270089|emb|CAB79904.1| protein phosphatase 2C-like
protein [Arabidopsis thaliana]
gi|16209698|gb|AAL14406.1| AT4g31860/F11C18_60
[Arabidopsis thaliana] gi|21360433|gb|AAM47332.1|
AT4g31860/F11C18_60 [Arabidopsis thaliana]
Length = 357
Score = 96.7 bits (239), Expect = 4e-19
Identities = 52/84 (61%), Positives = 62/84 (72%), Gaps = 1/84 (1%)
Frame = -1
Query: 793 CMSSQQLVDFIQGQLKTENKLSVVCEKVFDRCLAP-TAGGEGCDNMTMILIQFKSSWNPD 617
CM+SQQLVDFI QL +E KLSVVCEKV DRCLAP T+GGEGCDNMTMIL++FK NP
Sbjct: 277 CMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFK---NPT 333
Query: 616 TSAANQTESSAQPSEADSSSDNQS 545
S +TE + S+A+ + D S
Sbjct: 334 PS---ETELKPEASQAEGNHDEPS 354
>gb|AAG43835.1|AF213455_1 protein phosphatase type-2C [Zea mays]
Length = 366
Score = 92.8 bits (229), Expect = 5e-18
Identities = 51/89 (57%), Positives = 58/89 (64%), Gaps = 3/89 (3%)
Frame = -1
Query: 793 CMSSQQLVDFIQGQLKTENKLSVVCEKVFDRCLAP-TAGGEGCDNMTMILIQFKSSWN-- 623
CMSSQQLVDFI+ + TE LS VCE V DRCLAP T GGEGCDNMTMIL+QFK +
Sbjct: 277 CMSSQQLVDFIREHINTEESLSAVCEGVLDRCLAPSTMGGEGCDNMTMILVQFKKPFAQV 336
Query: 622 PDTSAANQTESSAQPSEADSSSDNQSEFQ 536
D S A Q A SE + +N S+ Q
Sbjct: 337 KDASDAEQLTGDAGCSETHGAEENGSDKQ 365
>ref|XP_080644.1| CG10417 [Drosophila melanogaster] gi|19921654|ref|NP_610169.1|
CG10417-PA [Drosophila melanogaster]
gi|24585838|ref|NP_724410.1| CG10417-PB [Drosophila
melanogaster] gi|7302240|gb|AAF57333.1| CG10417-PA
[Drosophila melanogaster] gi|15291807|gb|AAK93172.1|
LD27655p [Drosophila melanogaster]
gi|21626866|gb|AAM68379.1| CG10417-PB [Drosophila
melanogaster]
Length = 662
Score = 68.6 bits (166), Expect = 1e-10
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = -1
Query: 790 MSSQQLVDFIQGQLKTENKLSVVCEKVFDRCLAPTAGGE--GCDNMTMILIQFKSSWN-- 623
MSS+++V+F++ +LK KLS +CE++FD CLAP G+ GCDNMT +++QFK
Sbjct: 512 MSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFKKKLQEL 571
Query: 622 PDTSAANQTE 593
T NQTE
Sbjct: 572 QSTIPPNQTE 581
>gb|EAA11252.1| agCP5708 [Anopheles gambiae str. PEST]
Length = 752
Score = 64.3 bits (155), Expect = 2e-09
Identities = 36/82 (43%), Positives = 54/82 (64%), Gaps = 3/82 (3%)
Frame = -1
Query: 790 MSSQQLVDFIQGQL-KTENKLSVVCEKVFDRCLAP-TAG-GEGCDNMTMILIQFKSSWNP 620
M+S+Q+V F+Q ++ K KLS +CE++FD CLAP T G G GCDNMT I++QFK ++
Sbjct: 599 MTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGTGCDNMTAIIVQFKPNFT- 657
Query: 619 DTSAANQTESSAQPSEADSSSD 554
+ +T S++ S D + D
Sbjct: 658 GAGSRKRTASNSVASAVDGTDD 679
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,966,596
Number of Sequences: 1393205
Number of extensions: 13202952
Number of successful extensions: 32111
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 30816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32055
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
