Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004628A_C01 KMC004628A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB53491.2| AbiK [Lactococcus lactis] 33 3.0
>gb|AAB53491.2| AbiK [Lactococcus lactis]
Length = 599
Score = 32.7 bits (73), Expect = 3.0
Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 8/76 (10%)
Frame = +2
Query: 293 RNKNFSPSLRVLNMALYILEIVHLAEFWALLLLLRARLDTDFLELMGT--------YLLE 448
R NF+ L + + + + EI L LL L+ +D D+ ++GT Y LE
Sbjct: 431 RKNNFNQELYQILLYMVVFEIDDLLNQEELLNLIDLNID-DYSLILGTILYLKNSSYKLE 489
Query: 449 KALLKLQ*VFFNLHPN 496
K L K+ +F N H N
Sbjct: 490 KLLKKIDQLFINTHAN 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,687,346
Number of Sequences: 1393205
Number of extensions: 9332815
Number of successful extensions: 17494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17478
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
