Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004626A_C01 KMC004626A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188891.1| unknown protein; protein id: At3g22520.1, suppo... 35 0.59
pir||S60619 homeotic protein cnox1 - hydromedusa (Podocoryne car... 34 0.77
dbj|BAB60915.1| OSJNBa0054L14.8 [Oryza sativa (japonica cultivar... 33 1.3
ref|NP_390394.1| yqfQ [Bacillus subtilis] gi|1731005|sp|P54474|Y... 33 1.3
gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii y... 33 1.7
>ref|NP_188891.1| unknown protein; protein id: At3g22520.1, supported by cDNA:
gi_17381093, supported by cDNA: gi_20259294 [Arabidopsis
thaliana] gi|11994284|dbj|BAB01467.1|
emb|CAB10263.1~gene_id:F16J14.8~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|17381094|gb|AAL36359.1| unknown protein [Arabidopsis
thaliana] gi|20259295|gb|AAM14383.1| unknown protein
[Arabidopsis thaliana]
Length = 600
Score = 34.7 bits (78), Expect = 0.59
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +1
Query: 139 QKTRKPN------RP*ETKNKQ*NEKGNRNKHKLDDLNPKTNVSTASRPHPDPTSFKRNQ 300
Q+ RKP P E K K +G+ NK K P T ++++P P S +R
Sbjct: 237 QRKRKPMPTPQTYEPVEAKPKS-TPRGSSNKKKKGATTPATGPQSSTKPKPSRQSGRRTS 295
Query: 301 HQQKPKTLRAEGDRNLINLVDTNEN*GEEATTPSCMNHK*TKILNQPSSTIRPP 462
QQ+ ++L NE E AT P N + + +N + P
Sbjct: 296 IQQR---------GGAVDLNFLNEEESEPATAPKTSNKRKKRGVNYEEEDVSIP 340
>pir||S60619 homeotic protein cnox1 - hydromedusa (Podocoryne carnea)
gi|976094|emb|CAA57211.1| hox1 [Podocoryne carnea]
Length = 278
Score = 34.3 bits (77), Expect = 0.77
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 48 YFRKYFLRKHFQKINQTYFHSYFLILGKMKTENAQTKQALRNQKQTVKRERKQKQTQIRR 227
+F KY R +I+ T + AQ K +N++ KRE+K+K + IR+
Sbjct: 193 HFNKYLTRARRVEISHT-----------LDLTEAQIKIWFQNRRMKHKREQKEKMSHIRK 241
Query: 228 P-KPKNQCQYCFP-TTPRPNILQKKSTP 305
P N+C +P + PN + ++ P
Sbjct: 242 KVTPPNRCPVEYPCSNSWPNTIYQEQPP 269
>dbj|BAB60915.1| OSJNBa0054L14.8 [Oryza sativa (japonica cultivar-group)]
gi|20804505|dbj|BAB92200.1| P0520B06.25 [Oryza sativa
(japonica cultivar-group)]
Length = 166
Score = 33.5 bits (75), Expect = 1.3
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 126 GKMKTENAQTKQALRNQKQTVKRERKQKQTQIRRPKPKNQCQYCFPTTPRPNILQKKSTP 305
GK + +N +TK +N+K+T KRE KQK+T+ R K + + P +KK T
Sbjct: 46 GKGREKNRKTKT--QNRKRTEKREEKQKKTKTEREPKKTEEKQKKPKQKN----RKKKTH 99
Query: 306 AEA 314
A A
Sbjct: 100 ARA 102
>ref|NP_390394.1| yqfQ [Bacillus subtilis] gi|1731005|sp|P54474|YQFQ_BACSU
Hypothetical protein yqfQ gi|7475307|pir||C69954
hypothetical protein yqfQ - Bacillus subtilis
gi|1303838|dbj|BAA12494.1| YqfQ [Bacillus subtilis]
gi|2634948|emb|CAB14445.1| yqfQ [Bacillus subtilis
subsp. subtilis str. 168]
Length = 247
Score = 33.5 bits (75), Expect = 1.3
Identities = 23/83 (27%), Positives = 41/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 83 KN*PNIFSLLFSNFRENENRKRANQTGPKKP--KTNSKTRKETETNTN*TT*TQKPMSVL 256
+N P + L + ++ AN+ K+ + +S+ KETET T+ KP S
Sbjct: 145 RNLPAMMKLYSQLSKSDDTETEANEESEKQSVSEESSEKEKETETKTSDGNKKSKPKSSS 204
Query: 257 LPDHTQ-TQHPSKEINTSRSQKR 322
LP ++ T + +E+ TS +K+
Sbjct: 205 LPKKSKTTDNKEQELKTSAPKKK 227
>gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
Length = 968
Score = 33.1 bits (74), Expect = 1.7
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +2
Query: 8 NNENVFFLFTYWSLFPKIFSKKTFSKN*PNIFSL-----LFSNFRENENRKRANQTGPKK 172
NN++V L TY KI N NI L + E +N K+ N KK
Sbjct: 823 NNDDVLILITYGGYIKKIKINDKLKNNVNNIMKLSNAKYILKEIEETKNVKKTN--NEKK 880
Query: 173 PKTNSKTRKETETN 214
KT E +TN
Sbjct: 881 INNEKKTNNEKKTN 894
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,168,023
Number of Sequences: 1393205
Number of extensions: 8768503
Number of successful extensions: 34666
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 31270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34279
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
