Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004625A_C01 KMC004625A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02011 probable cathepsin B-like cysteine proteinase (EC 3.... 164 8e-40
ref|NP_567215.1| cathepsin B-like cysteine protease, putative; p... 164 8e-40
gb|AAC24376.1| cathepsin B-like cysteine proteinase [Arabidopsis... 162 2e-39
ref|NP_563647.1| cathepsin B-like cysteine protease, putative; p... 162 2e-39
ref|NP_563648.1| Expressed protein; protein id: At1g02305.1, sup... 162 2e-39
>pir||T02011 probable cathepsin B-like cysteine proteinase (EC 3.4.22.-)
T15B16.17a - Arabidopsis thaliana
gi|3859606|gb|AAC72872.1| contains similarity to
cysteine proteases (Pfam: PF00112, E=1.3e-79, N=1)
[Arabidopsis thaliana] gi|7268205|emb|CAB77732.1|
cathepsin B-like cysteine protease [Arabidopsis
thaliana]
Length = 359
Score = 164 bits (414), Expect = 8e-40
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2
Query: 540 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 361
VYEDFAHYKSGVYKHITGS +GGHAVKLIGWGT+ EGEDYWL+ANQWNR WGDDGYFMIR
Sbjct: 263 VYEDFAHYKSGVYKHITGSNIGGHAVKLIGWGTSSEGEDYWLMANQWNRGWGDDGYFMIR 322
Query: 360 RGTNECGIEEDVTAGLPSTKNMGR 289
RGTNECGIE++ AGLPS+KN+ R
Sbjct: 323 RGTNECGIEDEPVAGLPSSKNVFR 346
>ref|NP_567215.1| cathepsin B-like cysteine protease, putative; protein id:
At4g01610.1, supported by cDNA: 20761., supported by
cDNA: gi_13877860, supported by cDNA: gi_17473833,
supported by cDNA: gi_21281112 [Arabidopsis thaliana]
gi|13877861|gb|AAK44008.1|AF370193_1 putative cathepsin
B cysteine protease [Arabidopsis thaliana]
gi|17473834|gb|AAL38343.1| unknown protein [Arabidopsis
thaliana] gi|21281113|gb|AAM45063.1| putative cathepsin
B cysteine protease [Arabidopsis thaliana]
gi|21554165|gb|AAM63244.1| cathepsin B-like cysteine
protease, putative [Arabidopsis thaliana]
gi|24417490|gb|AAN60355.1| unknown [Arabidopsis
thaliana] gi|24899725|gb|AAN65077.1| unknown protein
[Arabidopsis thaliana]
Length = 359
Score = 164 bits (414), Expect = 8e-40
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2
Query: 540 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 361
VYEDFAHYKSGVYKHITGS +GGHAVKLIGWGT+ EGEDYWL+ANQWNR WGDDGYFMIR
Sbjct: 263 VYEDFAHYKSGVYKHITGSNIGGHAVKLIGWGTSSEGEDYWLMANQWNRGWGDDGYFMIR 322
Query: 360 RGTNECGIEEDVTAGLPSTKNMGR 289
RGTNECGIE++ AGLPS+KN+ R
Sbjct: 323 RGTNECGIEDEPVAGLPSSKNVFR 346
>gb|AAC24376.1| cathepsin B-like cysteine proteinase [Arabidopsis thaliana]
Length = 357
Score = 162 bits (411), Expect = 2e-39
Identities = 70/90 (77%), Positives = 81/90 (89%)
Frame = -2
Query: 540 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 361
VYEDFAHYKSGVYK+ITG+++GGHAVKLIGWGT+D+GEDYWL+ANQWNRSWGDDGYF IR
Sbjct: 261 VYEDFAHYKSGVYKYITGTKIGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIR 320
Query: 360 RGTNECGIEEDVTAGLPSTKNMGRWVMDMD 271
RGTNECGIE+ V AGLPS KN+ + + D
Sbjct: 321 RGTNECGIEQSVVAGLPSEKNVFKGITTSD 350
>ref|NP_563647.1| cathepsin B-like cysteine protease, putative; protein id:
At1g02300.1 [Arabidopsis thaliana]
Length = 379
Score = 162 bits (411), Expect = 2e-39
Identities = 70/90 (77%), Positives = 81/90 (89%)
Frame = -2
Query: 540 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 361
VYEDFAHYKSGVYK+ITG+++GGHAVKLIGWGT+D+GEDYWL+ANQWNRSWGDDGYF IR
Sbjct: 283 VYEDFAHYKSGVYKYITGTKIGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIR 342
Query: 360 RGTNECGIEEDVTAGLPSTKNMGRWVMDMD 271
RGTNECGIE+ V AGLPS KN+ + + D
Sbjct: 343 RGTNECGIEQSVVAGLPSEKNVFKGITTSD 372
>ref|NP_563648.1| Expressed protein; protein id: At1g02305.1, supported by cDNA:
gi_14532525, supported by cDNA: gi_16226807 [Arabidopsis
thaliana] gi|14532526|gb|AAK63991.1| At1g02300/T6A9_10
[Arabidopsis thaliana]
gi|16226808|gb|AAL16267.1|AF428337_1 At1g02300/T6A9_10
[Arabidopsis thaliana] gi|25090140|gb|AAN72238.1|
At1g02300/T6A9_10 [Arabidopsis thaliana]
Length = 362
Score = 162 bits (410), Expect = 2e-39
Identities = 70/90 (77%), Positives = 79/90 (87%)
Frame = -2
Query: 540 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 361
VYEDFAHYKSGVYKHITG+ +GGHAVKLIGWGT+D+GEDYWL+ANQWNRSWGDDGYF IR
Sbjct: 266 VYEDFAHYKSGVYKHITGTNIGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIR 325
Query: 360 RGTNECGIEEDVTAGLPSTKNMGRWVMDMD 271
RGTNECGIE V AGLPS +N+ + + D
Sbjct: 326 RGTNECGIEHGVVAGLPSDRNVVKGITTSD 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,103,317
Number of Sequences: 1393205
Number of extensions: 11338532
Number of successful extensions: 27119
Number of sequences better than 10.0: 1037
Number of HSP's better than 10.0 without gapping: 25834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26770
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
