Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004623A_C01 KMC004623A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32137.1| hypothetical protein [Picea mariana] 155 3e-37
gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana] 152 2e-36
ref|NP_564806.1| expressed protein; protein id: At1g63000.1, sup... 152 2e-36
gb|AAM65668.1| unknown [Arabidopsis thaliana] 152 2e-36
ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein... 147 5e-35
>gb|AAC32137.1| hypothetical protein [Picea mariana]
Length = 271
Score = 155 bits (391), Expect = 3e-37
Identities = 71/85 (83%), Positives = 82/85 (95%)
Frame = -3
Query: 518 RNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKL 339
RNLTGIWNFT+PGVVSHNEILEMYRDY+DP++T++NFTLEEQAKVIVA RSNNE+DASKL
Sbjct: 184 RNLTGIWNFTNPGVVSHNEILEMYRDYIDPSYTWRNFTLEEQAKVIVAARSNNEMDASKL 243
Query: 338 KKEFPQLLSIKDSLIKYVFDPNHKV 264
KKEFP+LL IK+SL+KYVF+PN KV
Sbjct: 244 KKEFPELLPIKESLVKYVFEPNQKV 268
>gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]
Length = 301
Score = 152 bits (384), Expect = 2e-36
Identities = 71/84 (84%), Positives = 82/84 (97%)
Frame = -3
Query: 518 RNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKL 339
RNLTGI+NFT+PGVVSHNEILEMYRDY+DP+FT+KNFTLEEQAKVIVAPRSNNELDA+KL
Sbjct: 213 RNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDATKL 272
Query: 338 KKEFPQLLSIKDSLIKYVFDPNHK 267
K EFP+L+SIK+SLIK+VF+PN K
Sbjct: 273 KTEFPELMSIKESLIKFVFEPNKK 296
>ref|NP_564806.1| expressed protein; protein id: At1g63000.1, supported by cDNA:
41505., supported by cDNA: gi_12083297, supported by
cDNA: gi_14423535 [Arabidopsis thaliana]
gi|25404387|pir||B96655 hypothetical protein F16P17.17
[imported] - Arabidopsis thaliana
gi|8493590|gb|AAF75813.1|AC011000_16 Contains weak
similarity to 5-epimerase from Saccharopolyspora
erythraea gb|L37354. ESTs gb|T41773, gb|R29767,
gb|T88368, gb|F13963 come from this gene. [Arabidopsis
thaliana] gi|12083298|gb|AAG48808.1|AF332445_1 unknown
protein [Arabidopsis thaliana]
Length = 301
Score = 152 bits (384), Expect = 2e-36
Identities = 71/84 (84%), Positives = 82/84 (97%)
Frame = -3
Query: 518 RNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKL 339
RNLTGI+NFT+PGVVSHNEILEMYRDY+DP+FT+KNFTLEEQAKVIVAPRSNNELDA+KL
Sbjct: 213 RNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDATKL 272
Query: 338 KKEFPQLLSIKDSLIKYVFDPNHK 267
K EFP+L+SIK+SLIK+VF+PN K
Sbjct: 273 KTEFPELMSIKESLIKFVFEPNKK 296
>gb|AAM65668.1| unknown [Arabidopsis thaliana]
Length = 300
Score = 152 bits (384), Expect = 2e-36
Identities = 71/84 (84%), Positives = 82/84 (97%)
Frame = -3
Query: 518 RNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKL 339
RNLTGI+NFT+PGVVSHNEILEMYRDY+DP+FT+KNFTLEEQAKVIVAPRSNNELDA+KL
Sbjct: 212 RNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDATKL 271
Query: 338 KKEFPQLLSIKDSLIKYVFDPNHK 267
K EFP+L+SIK+SLIK+VF+PN K
Sbjct: 272 KTEFPELMSIKESLIKFVFEPNKK 295
>ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein id: At1g78570.1,
supported by cDNA: gi_14596090, supported by cDNA:
gi_20148284 [Arabidopsis thaliana]
gi|25406555|pir||C96814 hypothetical protein T30F21.10
[imported] - Arabidopsis thaliana
gi|4836876|gb|AAD30579.1|AC007260_10 Similar to
dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
gi|14596091|gb|AAK68773.1| Similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
gi|20148285|gb|AAM10033.1| similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
Length = 669
Score = 147 bits (372), Expect = 5e-35
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = -3
Query: 518 RNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKL 339
RNL GIWNFT+PGVVSHNEILEMYRDY++P F + NFTLEEQAKVIVAPRSNNE+DASKL
Sbjct: 585 RNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKL 644
Query: 338 KKEFPQLLSIKDSLIKYVFDPNHK 267
KKEFP+LLSIK+SLIKY + PN K
Sbjct: 645 KKEFPELLSIKESLIKYAYGPNKK 668
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,285,613
Number of Sequences: 1393205
Number of extensions: 8877001
Number of successful extensions: 22228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22224
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
